View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_45 (Length: 230)
Name: NF16508_low_45
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 5676702 - 5676898
Alignment:
| Q |
20 |
ctttgaaccgtgtccacatcgaataacgtgtccccggtaaatgaatatgaaggaatgagaagatcatccaaaacagcttgtcctaattgcattgccattc |
119 |
Q |
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| T |
5676702 |
ctttgaaccgtgtccacatcgaataacgtgtccccggtaaatgaatatgaaggaatgagaagatcatccagaacagcttgtcctaattgcattgccattc |
5676801 |
T |
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| Q |
120 |
ttttctccaaatcaagcctgcaagcaactgttgtatcaagatatatcgctgcacgtagcagcatagatagaaagcttactgacattgcattcttctc |
216 |
Q |
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| T |
5676802 |
ttttctccaaatcaagcctgcaagcaactgttgtatcaagatatatcgctgcacgtagcagcatagatagaaagcttactgacattgcattcttctc |
5676898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 39779078 - 39778973
Alignment:
| Q |
66 |
atgaaggaatgagaagatcatccaaaacagcttgtcctaattgcattgccattcttttctccaaatcaagcctgcaagcaactgttgtatcaagatatat |
165 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||| || || ||| |||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
39779078 |
atgaaggaaaaagaagatcatccaaaacagcctgtcctaattgcatggctatccttctctccaaatcaaacctgcaagcaacagttgtctcaagatatat |
39778979 |
T |
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| Q |
166 |
cgctgc |
171 |
Q |
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| T |
39778978 |
tgctgc |
39778973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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