View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16508_low_5 (Length: 672)
Name: NF16508_low_5
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 590
Target Start/End: Complemental strand, 6904806 - 6904243
Alignment:
| Q |
17 |
tgtacatggaattttgatttcattgaatacccgacagataatcaaattaagtagcatatacatcatagtttaaaatttaaatgcatagatatgtgtaaaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6904806 |
tgtacatggaattttgatttcattgaatacccgacagataatcaaattaagtagcatatacatcatagtttaaaatttaaatgcatagatatgtgtaaaa |
6904707 |
T |
|
| Q |
117 |
tttaacaaaaagtaannnnnnnnacaataaataactatctcatttgattagcaataatagtttggatacaatcggacatatcaatgaacaaatagaaact |
216 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| |
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| T |
6904706 |
tttaacaaaaagtatttttttttacgataaataactatctcatttgattagcaataatagtttggatacaatcgggcatataaatgaacaaacggaaact |
6904607 |
T |
|
| Q |
217 |
aggtagagatgtagccaccatagcaaggccatgaacaccctcatttgtttgtttcctaataaattcaaagtgcaagtttatgaaaaaggacgagaatgaa |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||| |
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| T |
6904606 |
aggtagagatgtagccaccatagcaaggccatgaacaccctcatttgtttgttttctaataaactcaaagtg------tatgaaaaaggatgagaatt-- |
6904515 |
T |
|
| Q |
317 |
tttctacattctcttataatagctccaagttcagattcatctctactattactatgaaaactagtctaactcaaaaaacacattaccaatatgaaaatcc |
416 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |
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| T |
6904514 |
------cattctcttataatagctccaagttcagattcatctctactattactatgaaaactagtctaactcaaaaatcacattactaatatgcaaatcc |
6904421 |
T |
|
| Q |
417 |
ttcaaccatctgataacaaaca----gtaggcctaaatcctctaattcatcaacttttaggatggacagaattcattatgcttttgctaaaacaaaactt |
512 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6904420 |
ttcaaccatctgataacaaacaaacagtaggcctaaatcctctcattcatcaacttttaggatggacaaaattcattatgcttttgctaaaacaaaactt |
6904321 |
T |
|
| Q |
513 |
ccttcatcgtctctaatacacatttcaatccccactctattacttgacctggagaaagctgcatcgatgttaccctta |
590 |
Q |
| |
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|||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6904320 |
ccttaaacgcctctaatacacatttcaatccccactctactacttgacctggagaaagctgcatcgatgttaccctta |
6904243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 588 - 658
Target Start/End: Complemental strand, 6904222 - 6904152
Alignment:
| Q |
588 |
ttagtgcggcatgtctgcacgttatgccaactcgagagtagattctaacctctcttgcatactgctgcctg |
658 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
6904222 |
ttagtgcggcatgtctgcgcgttatgccaactcgagagtagattctaacccctctcgcatactgctgcctg |
6904152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 579
Target Start/End: Original strand, 5444342 - 5444378
Alignment:
| Q |
543 |
cccactctattacttgacctggagaaagctgcatcga |
579 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |
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|
| T |
5444342 |
cccactctattgcttgacatggagaaagctgcatcga |
5444378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 579
Target Start/End: Original strand, 5453386 - 5453422
Alignment:
| Q |
543 |
cccactctattacttgacctggagaaagctgcatcga |
579 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |
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|
| T |
5453386 |
cccactctattgcttgacatggagaaagctgcatcga |
5453422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 5e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 140 - 579
Target Start/End: Complemental strand, 6593693 - 6593241
Alignment:
| Q |
140 |
acaataaataactatctcatttgatta-gcaataatagtttggatacaatcggacatatcaatgaacaaatagaaactaggtagagatgtagccaccata |
238 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| ||||||||| | ||||||||||||||||| ||||||||| ||||||| ||||| || |
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| T |
6593693 |
acaataaataactatctcatttcattaagcaataatagtttagatacaatcaggcatatcaatgaacaaatgaaaactaggttgagatgtggccactcta |
6593594 |
T |
|
| Q |
239 |
gcaaggccatgaacaccctcatttgtttgtttcctaataaattcaaa-gtgcaagtttatgaaaaaggacgagaatgaatttctacattctcttataata |
337 |
Q |
| |
|
|||| |||||||| |||||||||||||| || ||||||||||||| || |||||| ||||||| |||| || ||||||||||||||||||||||| |
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|
| T |
6593593 |
gcaa-gccatgaa---cctcatttgtttgtatcataataaattcaaacctgaaagtttttgaaaaaagacgggagtgaatttctacattctcttataagt |
6593498 |
T |
|
| Q |
338 |
gctccaagttcagattcatctctactattactatgaaaact-----------------agtctaactcaaaaaacacattaccaatatgaaaatccttca |
420 |
Q |
| |
|
|||||||||| |||||||| || | ||||||| ||||| |||| |||| |||| | ||||| |||||| |||||||||| |
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|
| T |
6593497 |
gctccaagtttagattcattcttaagactactatggaaactatcaactactctcgtagagtccaacttaaaagtcgcattattaatatgcaaatccttca |
6593398 |
T |
|
| Q |
421 |
accatctgataacaaacagtaggcctaaatcctctaattcatcaacttttaggatggacagaattcattatgcttttgctaaaacaaaacttccttcatc |
520 |
Q |
| |
|
||||||||||| | |||||||| |||||| ||||| |||||||||||||||||||| ||||||| | | |||||||||||||||||||| | ||| |
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|
| T |
6593397 |
accatctgatagcgaacagtagacctaaagcctctccttcatcaacttttaggatgggtgaaattcat--tccgtttgctaaaacaaaacttccatgatc |
6593300 |
T |
|
| Q |
521 |
gtctctaatacacatttcaatccccactctattacttgacctggagaaagctgcatcga |
579 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||||| |||||| ||||||||| |
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|
| T |
6593299 |
gtctctaatacacataccaatccccactatgttacttgacctagagaaaactgcatcga |
6593241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 140 - 379
Target Start/End: Original strand, 10980867 - 10981106
Alignment:
| Q |
140 |
acaataaataactatctcatttgattagcaataatagtttggatacaatcggacatatcaatgaacaaatagaaactaggtagagatgtagccaccatag |
239 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| || |||||||| | ||| ||| | ||||||| |||||||| || ||||| ||| || ||| |
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|
| T |
10980867 |
acaataaataactatatcatttcattagcaataataggttcaatacaatcaggcatctcagtaaacaaatggaaactagataacgatgtggccgccctag |
10980966 |
T |
|
| Q |
240 |
caaggccatgaacaccctcatttgtttgtttcctaataaattcaaagtgcaagtttatgaaaaaggacgagaatgaatttctacattctcttataatagc |
339 |
Q |
| |
|
|||| | |||| || ||| |||||||||| |||||||||| |||| ||| ||||| ||||||| || ||||||||||||||||| ||||| ||||| || |
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|
| T |
10980967 |
caagactatgagcaaccttatttgtttgtctcctaataaactcaacctgcgagtttgtgaaaaaagatgagaatgaatttctacactctctaataattgc |
10981066 |
T |
|
| Q |
340 |
tccaagttcagattcatctctactattactatgaaaacta |
379 |
Q |
| |
|
||||| |||||||||||| ||| ||| |||| |||||| |
|
|
| T |
10981067 |
tccaaaatcagattcatctttacgattgttatggaaacta |
10981106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 255 - 372
Target Start/End: Complemental strand, 6540620 - 6540503
Alignment:
| Q |
255 |
cctcatttgtttgtttcctaataaattcaaagtgcaagtttatgaaaaaggacgagaatgaatttctacattctcttataatagctccaagttcagattc |
354 |
Q |
| |
|
|||||||| |||| |||||||||| |||| | ||||||| ||||||| | |||||||||||||||||| ||||| |||||||||||||| || ||||| |
|
|
| T |
6540620 |
cctcatttacttgtctcctaataaactcaacctacaagtttttgaaaaatgtcgagaatgaatttctacactctctaataatagctccaagctccgattc |
6540521 |
T |
|
| Q |
355 |
atctctactattactatg |
372 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
6540520 |
atctctgcgattactatg |
6540503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 372
Target Start/End: Original strand, 38768628 - 38768851
Alignment:
| Q |
149 |
aactatctcatttgattagcaataatagtttggatacaatcggacatatcaatgaacaaatagaaactaggtagagatgtagccaccatagcaaggccat |
248 |
Q |
| |
|
||||||||||||| |||| |||||| | ||| ||||| || |||| ||||| |||| || ||||||||||| | |||| |||||| |||| | | || |
|
|
| T |
38768628 |
aactatctcatttcattatcaataagattttcaatacagtcaaacatctcaataaacagatggaaactaggtaaaaatgtggccaccctagctaaactat |
38768727 |
T |
|
| Q |
249 |
gaacaccctcatttgtttgtttcctaataaattcaaagtgcaagtttatgaaaaaggacgagaatgaatttctacattctcttataatagctccaagttc |
348 |
Q |
| |
|
|| || ||||||| ||| |||||||||| |||| | ||||| | ||||| ||||||||||| | ||||||||| || |||||||||| || |
|
|
| T |
38768728 |
gagcaatatcatttgcctgtctcctaataaactcaacctcggagtttgtaaaaaaagacgagaatgatcaacgacattctctgatgatagctccaatatc |
38768827 |
T |
|
| Q |
349 |
agattcatctctactattactatg |
372 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
38768828 |
agattcatctctacgattactatg |
38768851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 10417991 - 10418040
Alignment:
| Q |
140 |
acaataaataactatctcatttgattagcaataatagtttggatacaatc |
189 |
Q |
| |
|
|||| ||| ||| ||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
10417991 |
acaagaaaaaaccatctcttttcattagcaataatagtttggatacaatc |
10418040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 34698744 - 34698708
Alignment:
| Q |
140 |
acaataaataactatctcatttgattagcaataatag |
176 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
34698744 |
acaataaataactatatcatttcattagcaataatag |
34698708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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