View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_6 (Length: 671)
Name: NF16508_low_6
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 607; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 6 - 668
Target Start/End: Complemental strand, 44110325 - 44109665
Alignment:
| Q |
6 |
tgtccaagaatataaactagtataaattgattcagttcatgaaatgcaaaccccataaattattgttgaaggaagctatttaacttaaccgcgccttatt |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44110325 |
tgtccaataatataaactagtataaattgattcagttcatgaaatgcaaaccccataaattattgttgaaggaagctatttaacttaaccgcgccttatt |
44110226 |
T |
|
| Q |
106 |
aaagttagacaagaaaattcaattcctactnnnnnnnnntatttacttaaactgaatgtctcatcttctcatgtctgcaagttgattcttgacatccgcc |
205 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44110225 |
aaagttagacaagaaaattcaattcctactaaaaaaa--tatttacttaaactgaatgtctcatcttctcatgtctgcaagttgattcttgacatccgcc |
44110128 |
T |
|
| Q |
206 |
aggttcttcaaaggcacaccatgtggtaaaaatggcgaacaggtaatctcgatctgctttaaaactcttgcattttgtaaaataaactcaacgaaactga |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44110127 |
aggttcttcaaaggcacaccatgtggtaaaaatggcgaacaggtaatctcgatcagctttaaaactcttgcattttgtaaaataaactcaacgaaactga |
44110028 |
T |
|
| Q |
306 |
ttgaactataatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaacaataaggcactggaattaatgcatagtctctcttatcgac |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44110027 |
ttgaactataatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaacaataaggccctggaattaatgcatagtctctcttatcgac |
44109928 |
T |
|
| Q |
406 |
gattttgccaattccctaaataagaatcaattaacaagttagcggatagaagtaatatcactgttttaacatttaaatgaggcagattaagcaggatata |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44109927 |
gattttgccaattccctaaataagaatcaattaacaagttagcggatagaagtaatatcactgttttaacatttaaatgaggcagattaagcaggatata |
44109828 |
T |
|
| Q |
506 |
aggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattccagtattgtttttctagtgaaaggtttaatcctccgatgcagac |
605 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
44109827 |
aggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattccagtactgtttttatagtgaaaggtttaatcctccgatgcagac |
44109728 |
T |
|
| Q |
606 |
aaagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcatagaaaggat |
668 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44109727 |
aaagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcatagagaggat |
44109665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 283 - 662
Target Start/End: Complemental strand, 40276975 - 40276583
Alignment:
| Q |
283 |
taaaataaactcaacgaaactgattgaactata---------atatccatgaaagtctgaaatctgaagcatcttgagagaaga--tttgaaacaataag |
371 |
Q |
| |
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||||| |||||||| |||||||||||||||||| |||||||||||| | |||||| ||||| |||||||||||||| |||||||||||||| |
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| T |
40276975 |
taaaagaaactcaatgaaactgattgaactatatataatagaatatccatgaaaatttgaaatgtgaagtatcttgagagaagaaatttgaaacaataag |
40276876 |
T |
|
| Q |
372 |
gcactggaattaatgcatagtctctcttatcgacgattttgccaattccctaaataagaatcaattaacaagttagcggatagaagt-aatatcactgtt |
470 |
Q |
| |
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||||||||||| ||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |||| |
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| T |
40276875 |
gcactggaatttatgcatagtttctcttatccacgagtttgccaattccctaaattggaatcaattaacaagttagtggatagaagtaaatatcattgtt |
40276776 |
T |
|
| Q |
471 |
ttaacatttaaatgaggcagattaagcaggata----taaggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattccagta |
566 |
Q |
| |
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|||||| | ||||||| |||||||||||||||| ||||| ||||| |||||| |||||||| ||||| |||||||||||||||||||||||||| || |
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| T |
40276775 |
ttaacaatgaaatgagacagattaagcaggatataattaaggtgtacctgaggaaaaacaagagcttccaatttaggacaccttaagaggaattccatta |
40276676 |
T |
|
| Q |
567 |
ttgtttttctagtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcataga |
662 |
Q |
| |
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|||||||||| |||| ||||| | || |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||| |
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| T |
40276675 |
atgtttttctactgaa---gataatctccaaatccagacaaagatgtgtcaaattgtggagctcaggaaggggatggagatgatcaattacataga |
40276583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 265 - 662
Target Start/End: Original strand, 40450314 - 40450710
Alignment:
| Q |
265 |
taaaactcttgcattttgtaaaataaactcaacgaaactgattgaactataatatccatgaaagtctgaaatctgaagcatcttgagagaagatttgaaa |
364 |
Q |
| |
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||||| ||||||||||| ||||| |||||||| ||| |||| || || | |||||| | | | |||||| ||||||||||||||||||||||||||| |
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| T |
40450314 |
taaaagtcttgcattttttaaaacaaactcaatgaattggattccacgatcagatccatcatattttgaaatgtgaagcatcttgagagaagatttgaaa |
40450413 |
T |
|
| Q |
365 |
caataaggcactggaattaatgcatagtctctcttatcgacgattttgccaattccctaaataagaatcaattaacaagttagcggatagaagtaatatc |
464 |
Q |
| |
|
||| |||||||||||||||||| |||| || |||| | || |||| || | ||||||||||||||||||||||||| | |||| ||| ||||||| |
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| T |
40450414 |
caacaaggcactggaattaatgtcgagtcattcatatccaagaatttggtaactgcctaaataagaatcaattaacaagtcaatggatggaaataatatc |
40450513 |
T |
|
| Q |
465 |
actgttttaacatttaaatgaggcagatta--agcaggatataaggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattcc |
562 |
Q |
| |
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| || |||||| | ||||| || |||||| || ||||||||||| |||||||||| | |||||| | |||||||||||||||||||| ||| |||||| |
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| T |
40450514 |
attgatttaacctagaaatgggggagattataagaaggatataaggtgtaccagaggtaaaacaagtgcttccagtttaggacaccttaggagaaattcc |
40450613 |
T |
|
| Q |
563 |
agtattgtttttctagtgaaaggtttaatcctccgatg-cagacaaagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcatag |
661 |
Q |
| |
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| || |||||||||| |||| | ||| |||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
40450614 |
attaatgtttttctactgaa---gtcaat-ctccaaagtcagacaaagatgtgtcaaattgtggaactcaggaaggagatggagatgatcaattacatag |
40450709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 40450213 - 40450254
Alignment:
| Q |
170 |
cttctcatgtctgcaagttgattcttgacatccgccaggttc |
211 |
Q |
| |
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|||| |||| |||||||||| ||||||||||||||||||||| |
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|
| T |
40450213 |
cttcccatgcctgcaagttggttcttgacatccgccaggttc |
40450254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 40507017 - 40507058
Alignment:
| Q |
170 |
cttctcatgtctgcaagttgattcttgacatccgccaggttc |
211 |
Q |
| |
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|||| |||| |||||||||| ||||||||||||||||||||| |
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|
| T |
40507017 |
cttcccatgcctgcaagttggttcttgacatccgccaggttc |
40507058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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