View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16508_low_8 (Length: 613)
Name: NF16508_low_8
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 45207417 - 45206838
Alignment:
| Q |
18 |
cccattatatcaatcacaaccaaatcacctcgccttggcatatcaccaccaccaattttcaattcatagtacctgtacatattatcacaaaaatgattca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45207417 |
cccattatatcaatcacaaccaaatcacctcgccttggcatatcaccaccaccaattttcaattcatagtacctgtacatattatcacaaaaatgattca |
45207318 |
T |
|
| Q |
118 |
cacaatatttgtatgtaattttcaaatcttctaatcatactgtgtgaaataaataattaaccttatgccattaggcagaatcacctctttctcctcctca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45207317 |
cacaatatttgtatgtaattttcaaatcttctaatcatactgtgtgaa----ataattaaccttatgccatttggcagaatcacctctttctcctcctca |
45207222 |
T |
|
| Q |
218 |
acattcctatcaatacaaaaatatcattattagtcatcactaaaagagctaactaatatttaaccattcatatatgattttcacaaatgtagcaagacat |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
45207221 |
acattcctatgaatacaaaaatatcattattagtcatcactaaaagagctaactaatatttaaccattcatatatgattttgacaaatgtagcatgacat |
45207122 |
T |
|
| Q |
318 |
agagnnnnnnnnntgtaacagtgagaaaccttgtgttagactcttgctgcgaaacctcaaggcgagttttaatttgttccgagacaacaccaaatgcaag |
417 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45207121 |
aga-aaaaaaaaatgtaacagtgagaaaccttgtgttagactcttgctgcgaaacctcaaggcgagttttaatttgttccgagacaacaccaaatgcaag |
45207023 |
T |
|
| Q |
418 |
aaaaccaacccatgcaagaccagctccaaggccaaaccgtctggtcaaggaagtggcaatccagtctgtggaatcaaccttagttgatgaaacaactggt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45207022 |
aaaaccaacccatgcaagaccagctccaaggccaaaccgtctggtcaaggaagtggcaatccagtctgtggaatcaaccttagttgatgaaacaactggt |
45206923 |
T |
|
| Q |
518 |
ttaataggaatctgttgctgtgctttggcagagacttgcactgactgatcttcattcaaatttgttgttgactgtggtgatgatg |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45206922 |
ttaataggaatctgttgctgtgctttggcagagacttgcactgactgatcttcattcaaatttgttgttgactgtggagatgatg |
45206838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University