View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_9 (Length: 530)
Name: NF16508_low_9
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 30461719 - 30462028
Alignment:
| Q |
19 |
ccttcaattataattatataattcctctaaaaataattgtataattaataatgctagttgcatatttgtataaactaatgaagtgaaatatatattgcca |
118 |
Q |
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| T |
30461719 |
ccttcaattataattatataattcctctaaaaataattgtataattaataatgctagttgcatatttgtataaactaatgaagtgaaatatatattgcca |
30461818 |
T |
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| Q |
119 |
tgagagagactaagagagtgataatcatcccaaataggcaaattagaagataaggagggaactaaacaaaagcattattacaagttttcaatgtctcagc |
218 |
Q |
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| T |
30461819 |
tgagagagacaaagagagtgataatcatcccaaataggcaaattagaagataaggagggaactaaacaaaagaattattacaagttttcaatgtctcagc |
30461918 |
T |
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| Q |
219 |
caatgtggacagtaattgattgttgatggagatattgggacccttgatgcatacttcactttatggagatattggacattaataataatgctacacattg |
318 |
Q |
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| T |
30461919 |
caatgtggacagtaattgattgttgatggagatattgggacccttgatgcatacttcactttatggagatattggacattaataataatgctacacattg |
30462018 |
T |
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| Q |
319 |
ctgtaaagta |
328 |
Q |
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| T |
30462019 |
ctggaaagta |
30462028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 325 - 522
Target Start/End: Original strand, 30462282 - 30462476
Alignment:
| Q |
325 |
agtatcttgaattgaagtaatagtagattataatgatgattttaaggttatgatgatgattatcgggctaacttccttttgtaataaaaaccttatgatt |
424 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30462282 |
agtatcttgaattgaagaaatagtaggttataatgatgattttaaggttatgatgatgattatcgggctaacttccttttgtaa---aaaccttatgatt |
30462378 |
T |
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| Q |
425 |
gcttaaggttttgccgtcttgctccctaaggcattaacccccatgacttttcaaccaacaggttttcccatggagattctttgtcttccacctatgct |
522 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30462379 |
gcttaaggttttgccgtcttgctccctaaggcattaacccccatgacttttcaaccaacaggttttcccatggagattctttgtcttccacctttgct |
30462476 |
T |
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