View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16509_high_3 (Length: 435)

Name: NF16509_high_3
Description: NF16509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16509_high_3
NF16509_high_3
[»] chr6 (18 HSPs)
chr6 (9-418)||(26876815-26877224)
chr6 (163-263)||(26638813-26638913)
chr6 (163-263)||(26744779-26744879)
chr6 (145-236)||(26626514-26626605)
chr6 (145-236)||(26732491-26732582)
chr6 (169-250)||(26827272-26827353)
chr6 (166-237)||(26888243-26888314)
chr6 (163-237)||(31287987-31288064)
chr6 (163-263)||(26805931-26806031)
chr6 (163-237)||(28789775-28789849)
chr6 (163-233)||(28795793-28795863)
chr6 (166-238)||(27657419-27657494)
chr6 (163-197)||(26888393-26888427)
chr6 (168-225)||(26059309-26059366)
chr6 (168-225)||(26079279-26079336)
chr6 (164-236)||(25077396-25077468)
chr6 (207-263)||(26852014-26852070)
chr6 (163-211)||(27601248-27601296)
[»] chr4 (10 HSPs)
chr4 (169-263)||(18720791-18720885)
chr4 (163-263)||(18676261-18676361)
chr4 (169-263)||(18652203-18652297)
chr4 (169-263)||(18686301-18686395)
chr4 (169-263)||(18696107-18696201)
chr4 (167-237)||(18650567-18650638)
chr4 (169-263)||(18728227-18728321)
chr4 (169-237)||(18718786-18718855)
chr4 (175-237)||(18692303-18692366)
chr4 (201-237)||(18682989-18683025)
[»] scaffold0277 (2 HSPs)
scaffold0277 (163-237)||(10350-10424)
scaffold0277 (163-233)||(1394-1464)
[»] chr5 (1 HSPs)
chr5 (164-220)||(29766647-29766703)
[»] chr1 (2 HSPs)
chr1 (163-238)||(265010-265088)
chr1 (166-236)||(26139436-26139506)
[»] chr7 (1 HSPs)
chr7 (166-220)||(10675106-10675160)
[»] chr2 (1 HSPs)
chr2 (163-221)||(18514576-18514634)


Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 9 - 418
Target Start/End: Original strand, 26876815 - 26877224
Alignment:
Q  9 gaagaaaatattagactatatagccaagattatcccgggaaactcgtttgtgaactggaggaagtactgttagaaaatgaatggatttatgtggagctta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876815 gaagaaaatattagactatatagccaagattatcccgggaaactcgtttgtgaactggaggaagtactgttagaaaatgaatggatttatgtggagctta 26876914  T
Q  109 agttgttagggaggtcattgaatccaagcgaggatgagattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcataga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876915 agttgttagggaggtcattgaatccaagcgaggatgagattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcataga 26877014  T
Q  209 ggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatatttgaggacgtgagacttttcgtgggtgcaagaaaagaaaagaaaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26877015 ggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatatttgaggacgtgagacttttcgtgggtgcaagaagagaaaagaaaa 26877114  T
Q  309 ggataatcataaagttaactgtcttgttgttgttctctcaataagaggaagcttactccacaatctcaagattgcatgtttgtgattctgtaagtggatg 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26877115 ggataatcataaagttaactgtcttgttgttgttctctcaataagaggaagcttactccacaatctcaagattgcatgtttgtgattctgtaagtgaatg 26877214  T
Q  409 atgtttgtgc 418  Q
    ||||||||||    
T  26877215 atgtttgtgc 26877224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 26638813 - 26638913
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 262  Q
    |||||| ||||||||||||||| || |||||||||| || ||  |||||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  26638813 gtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaata 26638912  T
Q  263 t 263  Q
    |    
T  26638913 t 26638913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 26744779 - 26744879
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 262  Q
    |||||| ||||||||||||||| || |||||||||| || ||  |||||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  26744779 gtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaata 26744878  T
Q  263 t 263  Q
    |    
T  26744879 t 26744879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 26626514 - 26626605
Alignment:
Q  145 agattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 236  Q
    |||||| || ||||||  ||||||||||||||||||| |||||||||||||||| || || ||| |||||||| ||||||||||||||||||    
T  26626514 agattaaaatattaaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattcaccaatccttat 26626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 26732491 - 26732582
Alignment:
Q  145 agattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 236  Q
    |||||| || ||||||  ||||||||||||||||||| |||||||||||||||| || || ||| |||||||| ||||||||||||||||||    
T  26732491 agattaaaatattaaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattcaccaatccttat 26732582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 26827272 - 26827353
Alignment:
Q  169 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaa 250  Q
    |||| ||||| |||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||  | |||||||||    
T  26827272 aaattggaattcacgtgttgaaggagaaaaggagcatggaggaggatgtgatattcaccaatccttatagtagaaagagaaa 26827353  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 26888243 - 26888314
Alignment:
Q  166 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 237  Q
    |||||||||||||  | |||||||||||||||   | ||| |||||||||||||||||||||||||||||||    
T  26888243 cacaaatgggaattgaagtgttgaaggagaaaggaaacatggaggaggatgtgatattcaccaatccttata 26888314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 31287987 - 31288064
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggagg---atgtgatattcaccaatccttata 237  Q
    ||||||||||||||||||||||||| ||||||||||||| |  ||||||||   |||||||||||||| |||| ||||    
T  31287987 gtgcacaaatgggaatccacgtgttaaaggagaaaaacaacgcagaggaggagaatgtgatattcaccgatccatata 31288064  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 26805931 - 26806031
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 262  Q
    |||| ||||| |||||||||||||| | |||||||| || ||  |||||| ||||| ||||||||||||||||||| | ||||| |||   |||||||||    
T  26805931 gtgctcaaatcggaatccacgtgttaatggagaaaagcaacacggaggagaatgtggtattcaccaatccttatattagaaagacaaaatcagatgaata 26806030  T
Q  263 t 263  Q
    |    
T  26806031 t 26806031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 28789775 - 28789849
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 237  Q
    |||| ||||||||||||||||||   |||||||||| || |  ||||||| |||||||||||||| |||||||||    
T  28789775 gtgcgcaaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatccttata 28789849  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 28795793 - 28795863
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatcct 233  Q
    |||| ||||||||||||||||||  ||||||||||| || |  ||||||| |||||||||||||| |||||    
T  28795793 gtgcgcaaatgggaatccacgtgaggaaggagaaaagcaacgcagaggagaatgtgatattcaccgatcct 28795863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 27657494 - 27657419
Alignment:
Q  166 cacaaatgggaatccacgtgttgaaggagaaaaacagcat---agaggaggatgtgatattcaccaatccttatat 238  Q
    |||||||||||||||||||||||||| |||||| || |||    |||||||||||| |||||||  ||||||||||    
T  27657494 cacaaatgggaatccacgtgttgaagaagaaaagcaacatggatgaggaggatgtggtattcactgatccttatat 27657419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 26888393 - 26888427
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaa 197  Q
    |||||||||| ||||||||||||||||||||||||    
T  26888393 gtgcacaaattggaatccacgtgttgaaggagaaa 26888427  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 26059309 - 26059366
Alignment:
Q  168 caaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattca 225  Q
    ||||||||||||||||||| ||||||||||| || ||| |||| || ||||| |||||    
T  26059309 caaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattca 26059366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 26079279 - 26079336
Alignment:
Q  168 caaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattca 225  Q
    ||||||||||||||||||| ||||||||||| || ||| |||| || ||||| |||||    
T  26079279 caaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattca 26079336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 25077396 - 25077468
Alignment:
Q  164 tgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 236  Q
    |||| ||| ||||||||| |||  ||||||||||| || ||  || ||||||||||||||||| |||||||||    
T  25077396 tgcaaaaaagggaatccatgtgcggaaggagaaaagcaacaaggatgaggatgtgatattcactaatccttat 25077468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 26852014 - 26852070
Alignment:
Q  207 gaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 263  Q
    |||| ||||||| ||||||||||||||| ||  | ||||||||| ||||||||||||    
T  26852014 gagggggatgtggtattcaccaatccttctagtagaaagagaaaactagatgaatat 26852070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 27601296 - 27601248
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagagga 211  Q
    ||||||||||||||||||| ||| |||||||||||| || |||| ||||    
T  27601296 gtgcacaaatgggaatccatgtggtgaaggagaaaagcaacataaagga 27601248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 18720885 - 18720791
Alignment:
Q  169 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 263  Q
    ||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||||||||||||||  | |||||||||  |||||||||||    
T  18720885 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaattagatgaatat 18720791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 18676361 - 18676261
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 262  Q
    ||||| ||||||||||||||||||  ||||||||||||| ||   | ||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  18676361 gtgcaaaaatgggaatccacgtgtgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaaatagatgaata 18676262  T
Q  263 t 263  Q
    |    
T  18676261 t 18676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 18652297 - 18652203
Alignment:
Q  169 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 263  Q
    ||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||  ||||||||||  | |||||||||  |||||||||||    
T  18652297 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcattaatccttatagtagaaagagaaaattagatgaatat 18652203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 18686395 - 18686301
Alignment:
Q  169 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 263  Q
    |||||||||||||||||| |||||||||||||| ||   | ||||||||||||||||||||| ||||||  | |||||||||  |||||||||||    
T  18686395 aaatgggaatccacgtgtggaaggagaaaaacaacacgaatgaggatgtgatattcaccaattcttatagtagaaagagaaaattagatgaatat 18686301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 18696201 - 18696107
Alignment:
Q  169 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 263  Q
    |||||||||||||||||| |||||||||||  | |||| | ||||||||||||||||||||||||||||  | ||||||| |  |||||||||||    
T  18696201 aaatgggaatccacgtgtggaaggagaaaagtaacataaatgaggatgtgatattcaccaatccttatagtagaaagagagaattagatgaatat 18696107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 18650638 - 18650567
Alignment:
Q  167 acaaatgggaatccacgt-gttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 237  Q
    |||||| ||||||||| | ||| ||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  18650638 acaaattggaatccactttgttcaagaagaaaagcagcatagagcaggatgtgatattcaccaatccttata 18650567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 18728321 - 18728227
Alignment:
Q  169 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 263  Q
    |||||||||||||||||   ||||||||||||| ||   | ||||||||||||||||||||||||||||  | | |||||||  |||||||||||    
T  18728321 aaatgggaatccacgtgcgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagatagagaaaattagatgaatat 18728227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 18718855 - 18718786
Alignment:
Q  169 aaatgggaatccac-gtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 237  Q
    |||| ||||||||| ||||| ||| |||||| |||||||||| |||||||||||||| ||||||||||||    
T  18718855 aaattggaatccactgtgttcaagaagaaaagcagcatagagcaggatgtgatattctccaatccttata 18718786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 18692366 - 18692303
Alignment:
Q  175 gaatccac-gtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 237  Q
    |||||||| ||||| ||| ||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  18692366 gaatccactgtgttcaagaagaaaaaaagcatggagcaggatgtgatattcatcaatccttata 18692303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 18683025 - 18682989
Alignment:
Q  201 agcatagaggaggatgtgatattcaccaatccttata 237  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  18683025 agcatagagcaggatgtgatattcatcaatccttata 18682989  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 10424 - 10350
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 237  Q
    |||| ||||||||||||||||||   |||||||||| || |  ||||||| |||||||||||||| |||||||||    
T  10424 gtgcgcaaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatccttata 10350  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 1464 - 1394
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatcct 233  Q
    |||||||||||||||||||||||  || |||||||| || |  ||||||| | |||||||||||| |||||    
T  1464 gtgcacaaatgggaatccacgtgaggatggagaaaagcaacgcagaggagaacgtgatattcaccgatcct 1394  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 29766647 - 29766703
Alignment:
Q  164 tgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgat 220  Q
    |||||||||||||||||| |||||||||| || || ||| || ||||||||||||||    
T  29766647 tgcacaaatgggaatccatgtgttgaaggcgataagcagtatggaggaggatgtgat 29766703  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 265088 - 265010
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggagg---atgtgatattcaccaatccttatat 238  Q
    ||||||||||||||||||||| ||| | |||||||| || ||  |||||||   |||| ||||||||||||||||||||    
T  265088 gtgcacaaatgggaatccacgagttaatggagaaaagcaacagggaggaggataatgttatattcaccaatccttatat 265010  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 26139436 - 26139506
Alignment:
Q  166 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 236  Q
    ||||||| ||||||||  |||| ||||||||||  ||||| |||||||||||  ||||||| |||||||||    
T  26139436 cacaaattggaatccatatgttcaaggagaaaagaagcatggaggaggatgtcgtattcactaatccttat 26139506  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 10675106 - 10675160
Alignment:
Q  166 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgat 220  Q
    |||||||||||||||| |||||||||| |||||||   || ||||||||||||||    
T  10675106 cacaaatgggaatccatgtgttgaaggcgaaaaacgatatggaggaggatgtgat 10675160  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 18514576 - 18514634
Alignment:
Q  163 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgata 221  Q
    ||||||||||| ||||| | |||||||||| ||||| ||| || |||||||||||||||    
T  18514576 gtgcacaaatgagaatctatgtgttgaaggcgaaaagcagtatggaggaggatgtgata 18514634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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