View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16509_low_3 (Length: 445)

Name: NF16509_low_3
Description: NF16509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16509_low_3
NF16509_low_3
[»] chr7 (3 HSPs)
chr7 (1-432)||(3437093-3437524)
chr7 (165-331)||(14798952-14799118)
chr7 (165-331)||(15245944-15246110)
[»] chr3 (4 HSPs)
chr3 (1-429)||(46239955-46240383)
chr3 (3-427)||(23541351-23541775)
chr3 (150-428)||(30038134-30038412)
chr3 (144-329)||(34584674-34584859)
[»] chr5 (1 HSPs)
chr5 (144-428)||(29878125-29878409)
[»] chr8 (1 HSPs)
chr8 (144-428)||(3921199-3921483)
[»] chr4 (3 HSPs)
chr4 (252-428)||(6869027-6869201)
chr4 (144-428)||(4497222-4497506)
chr4 (141-319)||(11318291-11318469)
[»] scaffold0300 (1 HSPs)
scaffold0300 (144-428)||(18005-18289)
[»] chr6 (1 HSPs)
chr6 (144-428)||(24676042-24676326)
[»] scaffold0140 (1 HSPs)
scaffold0140 (207-307)||(40053-40153)
[»] chr1 (2 HSPs)
chr1 (325-428)||(36915336-36915439)
chr1 (144-329)||(30964560-30964745)
[»] scaffold0121 (1 HSPs)
scaffold0121 (141-319)||(43429-43607)
[»] chr2 (1 HSPs)
chr2 (141-319)||(18131561-18131739)


Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 3437524 - 3437093
Alignment:
Q  1 aagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437524 aagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctgg 3437425  T
Q  101 aaacagggtgagtatcactgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttaca 200  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3437424 aaacagtgtgagtatcaatgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaagggtttaca 3437325  T
Q  201 aatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  3437324 aatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagt 3437225  T
Q  301 actttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437224 actttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagata 3437125  T
Q  401 tgtattcatatcagatcagcagaaggtaagtg 432  Q
    ||||||||||||||||||||||||||||||||    
T  3437124 tgtattcatatcagatcagcagaaggtaagtg 3437093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 331
Target Start/End: Complemental strand, 14799118 - 14798952
Alignment:
Q  165 tacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaac 264  Q
    ||||| || |||||||| || ||||| || || || | || |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| ||||||     
T  14799118 tacttctgctttgatggatgtaaaaagggattcactagtgcatgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaat 14799019  T
Q  265 tactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaac 331  Q
    |  |  | ||||| || ||||| |||||||| || ||||||||| | || |||||  ||||||||||    
T  14799018 tgttggtggctgtaggaagagatccaaatgatcaatactttcctttagcttttggtgttgttgaaac 14798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 331
Target Start/End: Complemental strand, 15246110 - 15245944
Alignment:
Q  165 tacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaac 264  Q
    ||||| || |||||||| || ||||| || || || | || |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| ||||||     
T  15246110 tacttctgctttgatggatgtaaaaagggattcactagtgcatgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaat 15246011  T
Q  265 tactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaac 331  Q
    |  |  | ||||| || ||||| |||||||| || ||||||||| | || |||||  ||||||||||    
T  15246010 tgttggtggctgtaggaagagatccaaatgatcaatactttcctttagcttttggtgttgttgaaac 15245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 46239955 - 46240383
Alignment:
Q  1 aagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctgg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46239955 aagctaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctgg 46240054  T
Q  101 aaacagggtgagtatcactgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttaca 200  Q
    ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46240055 aaatagtgtgagtatcaatgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttaca 46240154  T
Q  201 aatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagt 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46240155 aatggatgtaggccatttattggggttgatggttgtcatctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagt 46240254  T
Q  301 actttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240255 actttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagata 46240354  T
Q  401 tgtattcatatcagatcagcagaaggtaa 429  Q
    |||||||||||||||||||||||||||||    
T  46240355 tgtattcatatcagatcagcagaaggtaa 46240383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 3 - 427
Target Start/End: Original strand, 23541351 - 23541775
Alignment:
Q  3 gcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaa 102  Q
    ||||||||||| |||||||  |||||||| |||||||||||| | |||||  | |||||  |||| |||||||| ||||||||||| |||  | ||||||    
T  23541351 gcaaaacagattgctcagagtattgttgatggtgatgctgataggcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaa 23541450  T
Q  103 acagggtgagtatcactgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaa 202  Q
    | |  ||||  || | ||| ||||| |||   |||  | | |||||||||||||| ||||| |||||||||||||||||||| || ||||| || |  ||    
T  23541451 ataatgtgaagataaatgtggatagaccaaccccatcaatccaacccaggtttggttctttctacttttgttttgatggctgtaagaaaggtttcatcaa 23541550  T
Q  203 tggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtac 302  Q
    ||| ||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||||||| || || | ||||||||| |||||||||||||| ||     
T  23541551 tgggtgtagaccatttgttggggtagatggatgtcatttaaagacaaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatat 23541650  T
Q  303 tttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatg 402  Q
    |||||  | |||||||| || || |||||  |||| |||| ||||||||| |||||||||||| |  |  ||||||||||||| |  ||||  |||||||    
T  23541651 tttccattggcatttggaatagtagaaacaaagtgtagggaaagctggaaatggttcatggagcttttaatggatgacattggaagggataggagatatg 23541750  T
Q  403 tattcatatcagatcagcagaaggt 427  Q
    | |||||||||||||| ||||||||    
T  23541751 tcttcatatcagatcaacagaaggt 23541775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 150 - 428
Target Start/End: Complemental strand, 30038412 - 30038134
Alignment:
Q  150 aggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaa 249  Q
    |||||||| |||||||| || ||||||||||| || || |||||||| | |  ||  || || || ||| |||| || |||||||| ||  | || ||||    
T  30038412 aggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttgaaaacaa 30038313  T
Q  250 agtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctg 349  Q
      || |||||||||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| || ||  ||    
T  30038312 gatacgggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttg 30038213  T
Q  350 gaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 428  Q
    ||| ||||||| | |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  30038212 gaaatggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta 30038134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 329
Target Start/End: Original strand, 34584674 - 34584859
Alignment:
Q  144 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 243  Q
    |||||||| |||||||||||||| ||||| ||||| || || ||| |||||||    ||||| ||||| || || || || || ||||| |||||| | |    
T  34584674 caacccagatttggatctttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttga 34584773  T
Q  244 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaa 329  Q
    | ||| | ||||| || ||||| || || ||||| || |||||  | |||||||| || | ||||||||| ||||| |||||||||    
T  34584774 aaacacaatatggcgggcaacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttgcttttggaattgttgaa 34584859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 428
Target Start/End: Original strand, 29878125 - 29878409
Alignment:
Q  144 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 243  Q
    ||||| |||||||| |||||||| || ||||||||||| || || |||||||| | |  ||  || || || ||| |||| || |||||||| ||  | |    
T  29878125 caaccaaggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttga 29878224  T
Q  244 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 343  Q
    | ||||  |||||||| |||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| ||     
T  29878225 aaacaagatatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaagga 29878324  T
Q  344 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 428  Q
    ||| ||||| ||||||||  |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  29878325 aagttggaaatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 29878409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 144 - 428
Target Start/End: Complemental strand, 3921483 - 3921199
Alignment:
Q  144 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 243  Q
    ||||| |||||||| |||||||| || ||||||||||| || || |||||||| | |  ||  || || || ||| |||| || |||||||| ||  | |    
T  3921483 caaccaaggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttga 3921384  T
Q  244 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 343  Q
    | ||||  || ||||| |||||  | |||||||| || |||||||||||||||||||| ||||| || || |||||  | |||||||||||||||| ||     
T  3921383 aaacaagataagggggacaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaagga 3921284  T
Q  344 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 428  Q
    ||| ||||| ||||||||  |||||||| |||| || || ||  ||||||| |||||||| |||||||||||||| || ||||||    
T  3921283 aagttggaaatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta 3921199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 252 - 428
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
Q  252 tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga 351  Q
    |||||||| |||||  | |||||||| || |||||||||||||||||||||||||| || || |||||  | |||||||||||||||| || ||| ||||    
T  6869027 tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga 6869126  T
Q  352 agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 428  Q
    | ||||||||| |||||||| |||| || || ||  |||||  |||| |||| |||||||||||||| || ||||||    
T  6869127 aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta 6869201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 428
Target Start/End: Complemental strand, 4497506 - 4497222
Alignment:
Q  144 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 243  Q
    ||||| || ||||| ||||| |||||||  |||||||| ||||| | ||| || | |  || |||||| || ||| | ||||||||||| || ||  | |    
T  4497506 caaccaagatttgggtctttctacttttcctttgatggatgcaagagaggattcaaagctgcatgtagaccttttgtgggggttgatgggtgccacttga 4497407  T
Q  244 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 343  Q
    |||| || ||||| || ||||| ||  | |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||  |||  | | |||    
T  4497406 agactaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggc 4497307  T
Q  344 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 428  Q
    ||||||||| ||||| |||||| || || || ||||||| || || |||||||||||||| |||||||||||||| |||||||||    
T  4497306 aagctggaaatggtttatggagctgttgatgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta 4497222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 11318469 - 11318291
Alignment:
Q  141 ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc 240  Q
    ||||| || |||||||||   ||||| ||||  |||||||| ||||||||||| |||   |  | |||||| || ||||| || |||||||| |||||||    
T  11318469 ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc 11318370  T
Q  241 taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg 319  Q
    ||||||| |  ||||| || ||||| || ||||| ||||  |||||||||||||| || || |||||| | ||||||||    
T  11318369 taaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatattttcctttagcatttgg 11318291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 428
Target Start/End: Original strand, 18005 - 18289
Alignment:
Q  144 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 243  Q
    |||||||| ||||| ||||| |||||||  |||||||||||||| | |||||| | |  || |||||| || ||| | ||||| ||||| || ||| | |    
T  18005 caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga 18104  T
Q  244 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 343  Q
    | || || ||||| || ||||| ||  | |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||    
T  18105 aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggc 18204  T
Q  344 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 428  Q
    ||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  18205 aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 18289  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 428
Target Start/End: Complemental strand, 24676326 - 24676042
Alignment:
Q  144 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 243  Q
    |||||||| ||||| ||||| |||||||  |||||||||||||| | |||||| | |  || |||||| || ||| | ||||| ||||| || ||| | |    
T  24676326 caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga 24676227  T
Q  244 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc 343  Q
    | || || ||||| || ||||| ||  | |||||||| || ||||| ||||||||||| ||||| || || |||||  ||||||||   ||  | | |||    
T  24676226 aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggc 24676127  T
Q  344 aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta 428  Q
    ||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| |||||||||    
T  24676126 aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta 24676042  T

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Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
Q  207 tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc 306  Q
    |||||||| ||||| || |||||||| |||||||| ||||| |||||||| |||   ||  | |||| ||||||||||||||||||||||||||| ||||    
T  40153 tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc 40054  T
Q  307 c 307  Q
    |    
T  40053 c 40053  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 428
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
Q  325 ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa 424  Q
    ||||||||||||||| || ||| ||||| ||||||||| |||||||  |||| || || ||  ||||||| |||||||| |||||||||||||| || ||    
T  36915336 ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa 36915435  T
Q  425 ggta 428  Q
    ||||    
T  36915436 ggta 36915439  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 329
Target Start/End: Original strand, 30964560 - 30964745
Alignment:
Q  144 caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa 243  Q
    |||||||| |||||||||||||| ||||| ||||| || || ||| |||||||    ||||| ||||| || || || || || ||||| |||||| | |    
T  30964560 caacccagatttggatctttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttga 30964659  T
Q  244 agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaa 329  Q
    | ||| | ||||| || ||||| || || ||||| || |||||  | |||||||| || | ||||||||| ||||| |||||||||    
T  30964660 aaacacaatatggcgggcaacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttgcttttggaattgttgaa 30964745  T

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Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 43429 - 43607
Alignment:
Q  141 ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc 240  Q
    ||||| || |||||||||   ||||| ||||  |||||||| ||||||||||| |||   |  | |||||| || ||||| || |||||||| |||||||    
T  43429 ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc 43528  T
Q  241 taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg 319  Q
    ||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||||| | ||||||||    
T  43529 taaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatattttcctttagcatttgg 43607  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 18131739 - 18131561
Alignment:
Q  141 ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc 240  Q
    ||||| || |||||||||   ||||| ||||  |||||||| ||||||||||| |||   |  | |||||| || ||||| || |||||||| |||||||    
T  18131739 ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc 18131640  T
Q  241 taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg 319  Q
    ||||||| |  ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||||| | ||||||||    
T  18131639 taaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatattttcctttagcatttgg 18131561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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