View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16509_low_5 (Length: 378)
Name: NF16509_low_5
Description: NF16509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16509_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 7120455 - 7120107
Alignment:
| Q |
19 |
tcaactctttactgcatttacttatttcctgtatgatttgttatagtatgttcttaaataaaagattctgtttcttagaaaaaataggaaggcgggatat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7120455 |
tcaactctttactgcatttacttatttcctgtatgatttgttatagtatgttcttaaataaaagattctgtttcttagaaaaa-taggaaggcgggatat |
7120357 |
T |
|
| Q |
119 |
tttttgaatgtggttgagtggtttgcactaactgaaattctattcatactaaactcttaacagtagacatttaaaaggagattaataatattgctacttc |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7120356 |
tttttgaatgtggtcgagtggtttgcactaactgaaattctattcatactaaactcttaacattagacatttaaaaggagattaataatattgctacttc |
7120257 |
T |
|
| Q |
219 |
ctaagtgcatgtatcatattttttagatacatgactaactatgtagatgaaccaagttgttaaaactccatactaacatcaatttcaacatatatttacc |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7120256 |
ctaagtgcatgtatcatattttctagatacatgactaactatgtagatgaaccaagttgttaaaactccatactaacatcaatttcaacatatatttacc |
7120157 |
T |
|
| Q |
319 |
aacatatagacttgtagttactgcatgacaatgaacacttattgcctttg |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7120156 |
aacatatagacttgtagttactgcatgacaatgaacacttattgcctttg |
7120107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University