View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16509_low_6 (Length: 325)
Name: NF16509_low_6
Description: NF16509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16509_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 40289144 - 40288838
Alignment:
| Q |
1 |
cgatacagacatgaacaccatacacaccatccatctgaagtgtcgatgctacatatcttatgtatgataagaagcaacaaaaaagactagaagcaattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40289144 |
cgatacagacatgaacaccatacacaccatccatatgaagtgtcgatgctacatatcttatgtatgataagaagcaacaaaa--gactagaagcaattaa |
40289047 |
T |
|
| Q |
101 |
catttaggatnnnnnnnnnnncgtacccagaaacaccatcagccttgacaaacttgggtaacccatcagacaaaccacgagcaaagccaggctgagtttg |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40289046 |
catttaggataaaaaaaaaaa-gtacccagaaacaccatcagccttgacaaacttgggtaacccatcagacaaaccacgagcaaagccaggctgagtttg |
40288948 |
T |
|
| Q |
201 |
tacacgaactttgactgcctccataggacaaagtgcacaatcagcaataacttctgctgaagcagaaccagctagatatatgaaagttttgtacttgact |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40288947 |
tacacgaactttgacagcctccataggacaaagtgcacaatcagcaataacttctgctgaagcagaaccagctagatatatgaaagttttgtacttgact |
40288848 |
T |
|
| Q |
301 |
gcattctctg |
310 |
Q |
| |
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|||||||||| |
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|
| T |
40288847 |
gcattctctg |
40288838 |
T |
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