View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16509_low_7 (Length: 287)
Name: NF16509_low_7
Description: NF16509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16509_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 31518075 - 31518345
Alignment:
| Q |
15 |
gttcaagtttatatagattataaggtagattgctttgagagaggggcgataatgatatgtttttgtttctcagtattgaatactggccggatccacagcg |
114 |
Q |
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| T |
31518075 |
gttcaagtttatatagattataaagtagattgctttgaaagaggggtgataatgatatgtttttgtttctcagtattgaatactggccggatccacagcg |
31518174 |
T |
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| Q |
115 |
tggcatcaaggaagcatacagggttttgaagtttgggggaaaagcatgtttaattggtcctgtctacccgacattttggttgtcgcgtttcttcgcagat |
214 |
Q |
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| T |
31518175 |
tggcatcaaggaagcatacagggttttgaagtttgggggaaaagcatgtttaattggtcctgtctacccgacattttggttgtcgcgtttcttcgcagat |
31518274 |
T |
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| Q |
215 |
gcttggatgcttttccctaaagaagaagagtatatcgagtggtttacgaaggcagggtttgatgatgtcca |
285 |
Q |
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| T |
31518275 |
gtttggatgcttttccctaaagaagaagagtatatcgagtggtttacgaaggcagggtttaaggatgtcca |
31518345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 34138646 - 34138470
Alignment:
| Q |
84 |
tcagtattgaatactggccggatccacagcgtggcatcaaggaagcatacagggttttgaagtttgggggaaaagcatgtttaattggtcctgtctaccc |
183 |
Q |
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| T |
34138646 |
tcagtattgaatactggcctgatccacagcgtggcattaaagaagcatacagagttctgaaaataggaggcaaagcgtgcattataggtcctgtataccc |
34138547 |
T |
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| Q |
184 |
gacattttggttgtcgcgtttcttcgcagatgcttggatgcttttccctaaagaagaagagtatatcgagtggttta |
260 |
Q |
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| T |
34138546 |
aacattttggttgtctcaattctttgcagacgtatggatgctcttccctaaagaggaagagtatattgaatggttta |
34138470 |
T |
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