View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16509_low_9 (Length: 226)
Name: NF16509_low_9
Description: NF16509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16509_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 42393318 - 42393494
Alignment:
| Q |
15 |
caaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtc |
114 |
Q |
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| T |
42393318 |
caaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtc |
42393417 |
T |
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| Q |
115 |
tctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcac |
191 |
Q |
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| T |
42393418 |
tctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcac |
42393494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 42376766 - 42376942
Alignment:
| Q |
15 |
caaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtc |
114 |
Q |
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| T |
42376766 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaaccttgtaggatcaaattctagtgggttctcccaaacataagggtc |
42376865 |
T |
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| Q |
115 |
tctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcac |
191 |
Q |
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| T |
42376866 |
tctatgaatagcccaaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcac |
42376942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 42387162 - 42387220
Alignment:
| Q |
15 |
caaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaacctt |
73 |
Q |
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| T |
42387162 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaacctt |
42387220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 42387228 - 42387291
Alignment:
| Q |
128 |
caaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcac |
191 |
Q |
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|||||||| | ||| |||| ||| |||| |||||||||||||||||| | |||||||||||||| |
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| T |
42387228 |
caaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcac |
42387291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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