View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16510_high_5 (Length: 446)
Name: NF16510_high_5
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16510_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 66 - 432
Target Start/End: Original strand, 21222944 - 21223312
Alignment:
| Q |
66 |
tgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatgaagaagagtttgaaagcaccttgttcttgttctcgaaatgtta |
165 |
Q |
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| T |
21222944 |
tgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatgaagaagagtttgaaagcaccttgttcttgttctggaaatgtta |
21223043 |
T |
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| Q |
166 |
aggtaagaaaaaacacatcatcttttaatgaactcatttcagagttttcttaattttcatcaataagtgattttgtatttatattttttcatactaaaat |
265 |
Q |
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| T |
21223044 |
aggtaagaaaaaacacatcatcttttaattaactcatttcagagttttcttaattttcatcaataagtgattttgtatttatattttttcatactaaaat |
21223143 |
T |
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| Q |
266 |
gtctcaaccaattatggtcctttagttgttctatcttcatgatattgtgatatgtaagaaatataaaataaggtttag--nnnnnnnnctctcttatgta |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
21223144 |
gtctcaaccaattatggtcctttagttgttctatcttcatgatattgtgatatgtaagaaatataaaataaggtttagttttttttttttttcttatgta |
21223243 |
T |
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| Q |
364 |
ttcagtgaacatgcatgataaatataaaaagatgggtatgtaatttgctaggctcatattgataattgt |
432 |
Q |
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| T |
21223244 |
ttcagtgaacatgcatgataaatataaaaagatgggtatgtaatttgctaggctcatattgataattgt |
21223312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 21222891 - 21222931
Alignment:
| Q |
16 |
acagagcaatatacataatttcaaaacaatgtctgaaactt |
56 |
Q |
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| T |
21222891 |
acagagcaatatagataatttgaaaacaaagtctgaaactt |
21222931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 44756523 - 44756577
Alignment:
| Q |
199 |
tcatttcagagttttcttaattttcatcaataagtgattttgtatttatattttt |
253 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44756523 |
tcatttcagaattttcttaattttcatcaataagtgattttgtatttattttttt |
44756577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 44756280 - 44756337
Alignment:
| Q |
66 |
tgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatga |
123 |
Q |
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| T |
44756280 |
tgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatga |
44756337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 432
Target Start/End: Original strand, 44757079 - 44757135
Alignment:
| Q |
375 |
tgcatgataaatataaaaagatgggtatgtaatttgctaggctcatattgataattgt |
432 |
Q |
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| T |
44757079 |
tgcatgataaatataaaa-gatgggtttgtaatttgctaagcttatattgataattgt |
44757135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 44756412 - 44756454
Alignment:
| Q |
136 |
aagcaccttgttcttgttctcgaaatgttaaggtaagaaaaaa |
178 |
Q |
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| T |
44756412 |
aagcaccttgttcttgttctggaactgttaaggtaagaaaaaa |
44756454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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