View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16510_low_10 (Length: 345)

Name: NF16510_low_10
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16510_low_10
NF16510_low_10
[»] chr3 (1 HSPs)
chr3 (10-345)||(49374209-49374544)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 49374544 - 49374209
Alignment:
Q  10 gtgagaagaaaaccgttataaagattagagacgttcgcgtaaccgtcatcaacgtctacgaaacaaacaatattaacgtctttcagaaatcagaattcag 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49374544 gtgaaaagaaaaccgttataaagattagagacgttcgcgtaaccgtcatcaacgtctacgaaacaaacaatattaacgtctttcagaaatcagaattcag 49374445  T
Q  110 atccaagttccatttctagaacgagnnnnnnnnnnnnnnnnnnnnnngcgcaatcgaggacgctacgagtgaaatcatgagtgaattgacttcagtatca 209  Q
    |||||||||||||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49374444 atccaagttccatttctagaacgagtctcttcttcttcttcttcttcgcgcaatcgaggacgctacgagtgaaatcatgagtgaattgacttcagtatca 49374345  T
Q  210 aacgagagtcctcggcgatctctgagcattcaactttcttccatgattatcgtcgatagcactttaccctacgacaaacttccttcccaaaatctcactc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49374344 aacgagagtcctcggcgatctctgagcattcaactttcttccatgattatcgtcgattgcactttaccctacgacaaacttccttcccaaaatctcactc 49374245  T
Q  310 tcactgtcctcaaattggattcttcttccttccgta 345  Q
    ||||||||||||||||||||||||||||||||||||    
T  49374244 tcactgtcctcaaattggattcttcttccttccgta 49374209  T

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