View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16510_low_14 (Length: 209)
Name: NF16510_low_14
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16510_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 30979867 - 30979987
Alignment:
| Q |
17 |
aacaagtgtatcataaaactatattttccacatgtatggcacgggttacatatataacatccatatatcattgtagtatcacgagcattattacaaaaac |
116 |
Q |
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| T |
30979867 |
aacaagtgtatcataaaactatattttccacatgtatggcacgggttacatatataacatccatatatcattgtagtatcacgagcattattacaaaaac |
30979966 |
T |
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| Q |
117 |
caaaaaggtatagaaaaattc |
137 |
Q |
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| T |
30979967 |
caaaaaggtatagaaaaattc |
30979987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 30980008 - 30980046
Alignment:
| Q |
158 |
agctactttgtaaagataagatgagatacacttcatctc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
30980008 |
agctactttgtaaagataagatgagatacacttcatctc |
30980046 |
T |
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