View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16510_low_15 (Length: 205)
Name: NF16510_low_15
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16510_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 45179586 - 45179771
Alignment:
| Q |
13 |
taaacacatgaatccccaaaaagaagaagacagaagtctgttcttcaaaatgtaagagagcaatccagtatttaaacaggctcgcct-----------ag |
101 |
Q |
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| T |
45179586 |
taaacacatgaatccccaaaaagaagaagacagaagtctgttcttcaaaatgtaagagagcaatccagtatttaaacaggctcgcctagtttggtccaag |
45179685 |
T |
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| Q |
102 |
aaaattctactgctaagggtagaaactgctcaaaggatcaaatattgacaaacattttacttaggtaaggaggcatgctgtctctgc |
188 |
Q |
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| T |
45179686 |
aaaattctactgctaagggtagaaactgctcaaaggatcaaatattgacaaaca-tttacttaggtaaggaggcatgctgtctctgc |
45179771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 45172877 - 45172964
Alignment:
| Q |
100 |
agaaaattctactgctaagggtagaaactgctcaaaggatcaaatattgacaaacattttacttaggtaaggaggcatgctgtctctgc |
188 |
Q |
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| T |
45172877 |
agaaatttctagtgctaaggctagaaactgctcagagaataaaatattgacaaaca-cttaccgaggtaaggatgcatgctgtctctgc |
45172964 |
T |
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