View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16510_low_2 (Length: 579)
Name: NF16510_low_2
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16510_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 28667011 - 28666619
Alignment:
| Q |
16 |
caaaggtcagatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatac |
115 |
Q |
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| T |
28667011 |
caaaggtcagatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatac |
28666912 |
T |
|
| Q |
116 |
tagctgggagagacacttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28666911 |
tagctgggagagacacttcttctgtggctttgagttggtttttttggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaa |
28666812 |
T |
|
| Q |
216 |
ggtggtgagtcagagaaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttgcatgcttgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28666811 |
ggtggtgagtcagagaaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttgcatgcttgt |
28666712 |
T |
|
| Q |
316 |
ttatctgaaactctcagattatatccttctgttcctgttgatcacaaagaggtaatttttcagtttttgtcacatcattcctttttcattcta |
408 |
Q |
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| T |
28666711 |
ttatctgaaactctcagattatatccttctgttcctgttgatcacaaggaggtaatttttcagtttttgtcacatcattcctttttcattcta |
28666619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 467 - 564
Target Start/End: Complemental strand, 28666589 - 28666492
Alignment:
| Q |
467 |
attgtggatttttaagaaaaatattgtttctatttacctatcatattcaaatttgaaagttacaaccactattttttatcagttacatgtatgtttat |
564 |
Q |
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| T |
28666589 |
attgtagatttttaagaaaaatattgtttctatttacctatcatattcaaatttgaaagttacaaccactattttttatcagttacatgtatgtttat |
28666492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 22 - 371
Target Start/End: Original strand, 13887542 - 13887897
Alignment:
| Q |
22 |
tcagatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctg |
121 |
Q |
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||||||||||||||||| ||||||||| | || ||||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| |||||| |
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| T |
13887542 |
tcagatttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagggatatatgtgtaagttttatattagctg |
13887641 |
T |
|
| Q |
122 |
ggagagacacttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggt |
221 |
Q |
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|||||||||||||||| || ||||| || ||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||| || |
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| T |
13887642 |
ggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagtggaggagaaaatattagaagagatttgcagggttgt |
13887741 |
T |
|
| Q |
222 |
gagtcagag------aaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttgcatgcttgt |
315 |
Q |
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|||||| || | | |||| || ||||||| ||| | ||||||| | ||| | ||||| ||||| || ||||||| |||||||||||| | |
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| T |
13887742 |
gagtcaaagggaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaagaagatgggttatttgcatgctgct |
13887841 |
T |
|
| Q |
316 |
ttatctgaaactctcagattatatccttctgttcctgttgatcacaaagaggtaat |
371 |
Q |
| |
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| || |||||||| ||||| ||||||||||||||| | ||||| ||||||||||| |
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| T |
13887842 |
ctttcagaaactcttagattgtatccttctgttcctatggatcataaagaggtaat |
13887897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 353
Target Start/End: Complemental strand, 13897665 - 13897337
Alignment:
| Q |
25 |
gatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctggga |
124 |
Q |
| |
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|||||||||||||| || |||| | | |||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||| ||| ||||||||| |
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| T |
13897665 |
gatttgttaactgtgttcatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagggatatttgtgtaaatttcatattagctggga |
13897566 |
T |
|
| Q |
125 |
gagacacttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtgag |
224 |
Q |
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||||||||||||| || ||||| || ||| |||| ||||||||||||||||||| |||||||| |||||||||||||| |||| ||| ||| | |
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| T |
13897565 |
gagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggttgtgtg |
13897466 |
T |
|
| Q |
225 |
tcagagaaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttgcatgcttgtttatctgaa |
324 |
Q |
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||| || | ||||| || ||||||| ||| | ||||||||| ||| | |||||| ||||| || |||||||| ||||||||||| | | || ||| |
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| T |
13897465 |
tcaaagggaggatattaataaggaagtgtttaatgattctttgagattcaagcctgaggagattaagaagatggattatttgcatgcagctctttcagaa |
13897366 |
T |
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| Q |
325 |
actctcagattatatccttctgttcctgt |
353 |
Q |
| |
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|||| ||||||||||||||||||||||| |
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| T |
13897365 |
gctcttagattatatccttctgttcctgt |
13897337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 7295696 - 7295586
Alignment:
| Q |
26 |
atttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctgggag |
125 |
Q |
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||||||||||||| || |||| | | | |||||||||||||| | | || |||||||||| | ||||||||||||| ||||||| ||| |||| ||||| |
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| T |
7295696 |
atttgttaactgtgttaatgaggcttacggatgagaatggaatttcatactcagataagtgt--gagggatatatgtttgaatttcatattagccgggag |
7295599 |
T |
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| Q |
126 |
agacacttcttct |
138 |
Q |
| |
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||||||||||||| |
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| T |
7295598 |
agacacttcttct |
7295586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 1034722 - 1034525
Alignment:
| Q |
25 |
gatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctggga |
124 |
Q |
| |
|
|||||||||||||| ||||||| | | |||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||| |
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| T |
1034722 |
gatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagggatatttgtgtaaattttatattagctggga |
1034623 |
T |
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| Q |
125 |
gagacacttcttctgtggctttgagttggnnnnnnnggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtg |
222 |
Q |
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||||||||||||| || |||||||| ||| |||| ||||||||||||||||||| |||||||| ||||||||||| || |||| ||||||| |
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| T |
1034622 |
gagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattagaagaaatttgcagggtggtg |
1034525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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