View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16510_low_3 (Length: 517)

Name: NF16510_low_3
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16510_low_3
NF16510_low_3
[»] chr2 (9 HSPs)
chr2 (122-497)||(3804271-3804642)
chr2 (1-127)||(17119999-17120128)
chr2 (122-179)||(45554568-45554625)
chr2 (122-179)||(6980242-6980299)
chr2 (122-179)||(12989192-12989249)
chr2 (122-179)||(9470082-9470139)
chr2 (122-179)||(28898035-28898092)
chr2 (122-179)||(41546149-41546206)
chr2 (123-179)||(18511332-18511388)
[»] chr3 (5 HSPs)
chr3 (122-179)||(5452182-5452239)
chr3 (122-179)||(20493567-20493624)
chr3 (122-179)||(28529254-28529311)
chr3 (123-178)||(27243047-27243102)
chr3 (128-179)||(29755501-29755552)
[»] chr8 (7 HSPs)
chr8 (374-473)||(27819157-27819255)
chr8 (365-447)||(1297135-1297217)
chr8 (126-179)||(31691637-31691690)
chr8 (122-179)||(32072098-32072155)
chr8 (126-176)||(11962807-11962857)
chr8 (122-175)||(35151851-35151904)
chr8 (122-162)||(2471374-2471414)
[»] chr7 (8 HSPs)
chr7 (122-179)||(31502586-31502643)
chr7 (122-179)||(14795132-14795189)
chr7 (122-179)||(15242124-15242181)
chr7 (122-179)||(19422956-19423013)
chr7 (122-179)||(22189940-22189997)
chr7 (122-179)||(33008105-33008162)
chr7 (123-179)||(24539246-24539302)
chr7 (125-177)||(45909584-45909636)
[»] chr6 (5 HSPs)
chr6 (122-179)||(34905337-34905394)
chr6 (122-169)||(10133280-10133327)
chr6 (122-169)||(31116246-31116293)
chr6 (122-179)||(8441959-8442016)
chr6 (122-179)||(8450763-8450820)
[»] chr1 (10 HSPs)
chr1 (324-436)||(7067866-7067979)
chr1 (122-179)||(39039477-39039534)
chr1 (122-174)||(28218170-28218222)
chr1 (122-179)||(6133746-6133803)
chr1 (122-179)||(13388335-13388392)
chr1 (122-179)||(25543341-25543398)
chr1 (122-179)||(26980384-26980441)
chr1 (122-179)||(33060014-33060071)
chr1 (127-179)||(3872760-3872812)
chr1 (449-497)||(49996566-49996614)
[»] chr4 (5 HSPs)
chr4 (125-179)||(8108957-8109011)
chr4 (122-179)||(40991711-40991768)
chr4 (122-179)||(39471158-39471215)
chr4 (122-179)||(47237863-47237920)
chr4 (123-179)||(48608081-48608137)
[»] chr5 (6 HSPs)
chr5 (125-174)||(10666692-10666741)
chr5 (122-179)||(28490844-28490901)
chr5 (124-169)||(13975478-13975523)
chr5 (393-497)||(18750082-18750186)
chr5 (127-179)||(25630808-25630860)
chr5 (123-179)||(28611901-28611957)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 122 - 497
Target Start/End: Complemental strand, 3804642 - 3804271
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcattagcgtgttagcttgggtgagtcttctttttggtttagccatt 221  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3804642 catccaataaaagagtgaatgttaaagagagtgttgaaaagtgagtgtagctagcattaacgtgttagcttgggtgagtcttctttttggtttagccatt 3804543  T
Q  222 ggctcctgtactaaattacattaaaatgagagggatcttaatgtcgtgtatgtatgagactatacagttgatagagagtttataaggatttgtgggtaat 321  Q
    ||||| || |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       
T  3804542 ggctcatgaactaaattacattaaaatgagaaggatcttaatgtcgtgtaggtatgagactatacagttgatagagagtttataaggatttgtgggt--- 3804446  T
Q  322 caatctataccaacaagatgcatctttatttcggtaatctaacatataagacctccatagttaagtgtgtctgacttagagtaatatttggatgggtaag 421  Q
     |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3804445 -aatctatatcaacaacatgcatctttatttcgataatctaacatataagacctccatagttaagtgtgtctgacttagagtaatatttggatggataag 3804347  T
Q  422 cttctggaaagttttctataaagtgtttgagtaaggacaaagcacactgaaataactcttgttagtttgtggggtc 497  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  3804346 cttccggaaagttttctataaagtgtttgagtaaggacaaagcacactgaaatgactcttgttggtttgtggggtc 3804271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 17120128 - 17119999
Alignment:
Q  1 aacatttttaatggttcatttctttacgttgattcatcttttctaaataagttaatgttgaaacatactcttcgagaagagaatgt---tgaagagaatg 97  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  17120128 aacatttttaatggttcatttctttatgttgattcaccttttctaaaaaagttaatgttgaaacatactcttcgagaagagaatgttggtgaagagaatg 17120029  T
Q  98 gtgctatagcgacactctctttaacatcca 127  Q
    ||||||||||||||||||||||||||||||    
T  17120028 gtgctatagcgacactctctttaacatcca 17119999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 45554625 - 45554568
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| || || ||||||| ||||||||||||||| |||||||||    
T  45554625 catccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcatt 45554568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 6980242 - 6980299
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| || || ||||||| ||||||||||| ||| |||||||||    
T  6980242 catccaataaaagagtgagtgctagagagagtgttgaaaagtgaatgttgctagcatt 6980299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 12989249 - 12989192
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||| ||||||||| ||  ||||||||| ||||||||||||||| |||||||||    
T  12989249 catccaatgaaagagtgagtgagaaagagagtgttgaaaagtgagtgttgctagcatt 12989192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 9470139 - 9470082
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| ||||| ||||||  ||||||| ||||| | |||||||||    
T  9470139 catccaataaaagagtgagtgttagagagagcgttgaaaaatgagtattgctagcatt 9470082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 28898092 - 28898035
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| || ||||||||||  | ||||| |||||| |||||||||    
T  28898092 catccaataaaagagtgagtgctaaagagagtactcaaaagagagtgttgctagcatt 28898035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 41546149 - 41546206
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||| ||||||||||||  ||||||| |||||||| |||||  |||||||||    
T  41546149 catccaataagagagtgaatgtttgagagagtgttgaaaagagagtgatgctagcatt 41546206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 18511332 - 18511388
Alignment:
Q  123 atccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||||||||||||| || ||  |||||| || |||||||||||| |||||||||    
T  18511332 atccaataaaagagtgagtgatagtgagagtgttaaaaagtgagtgttgctagcatt 18511388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 5452182 - 5452239
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  5452182 catccaataaaagagtgaatgttaaagagagtgttgaaaagtgagtgttgctagcatt 5452239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 20493567 - 20493624
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||||||| |||||| ||||| ||||||| ||||||||||||||| |||||||||    
T  20493567 catccaataaatgagtgagtgttagagagagtgttgaaaagtgagtgttgctagcatt 20493624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 28529311 - 28529254
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| || || ||||||| ||||||||||||||| |||||||||    
T  28529311 catccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcatt 28529254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 27243102 - 27243047
Alignment:
Q  123 atccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcat 178  Q
    ||||||||||||||||| ||||| ||||||| || ||||| |||||| ||||||||    
T  27243102 atccaataaaagagtgagtgttagagagagtgttcaaaagagagtgttgctagcat 27243047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 29755552 - 29755501
Alignment:
Q  128 ataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||  ||||||||||| | ||||||||||||||| |||||||||    
T  29755552 ataaaagagtgggtgttaaagagaatgttgaaaagtgagtgttgctagcatt 29755501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 473
Target Start/End: Complemental strand, 27819255 - 27819157
Alignment:
Q  374 ctccatagttaagtgtgtctgacttagagtaatatttggatgggtaagcttctggaaagttttctataaagtgtttgagtaaggacaaagcacactgaaa 473  Q
    ||||| |||||||||||| |||||| ||||| ||||||||||||| | ||||||  |||||||| | |||| || ||||| ||||| |||||||||||||    
T  27819255 ctccacagttaagtgtgtttgactttgagtagtatttggatgggtgaccttctgataagttttccagaaagcgtgtgagtgaggac-aagcacactgaaa 27819157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 447
Target Start/End: Original strand, 1297135 - 1297217
Alignment:
Q  365 atataagacctccatagttaagtgtgtctgacttagagtaatatttggatgggtaagcttctggaaagttttctataaagtgt 447  Q
    |||||||| |||||||||||||||||| ||||||  |||||| |||||||| || | |||||| ||||||||| | |||||||    
T  1297135 atataagaactccatagttaagtgtgtttgacttgaagtaatctttggatgagtgaccttctgaaaagttttcaagaaagtgt 1297217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 31691637 - 31691690
Alignment:
Q  126 caataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||| ||||||||||||| || |||||||||||| |||||||||    
T  31691637 caataaaagagtgagtgttaaagagagttttcaaaagtgagtgttgctagcatt 31691690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 32072155 - 32072098
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| || || ||||||| ||||||||||| ||| |||||||||    
T  32072155 catccaataaaagagtgagtgctagagagagtgttgaaaagtgaatgttgctagcatt 32072098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 11962807 - 11962857
Alignment:
Q  126 caataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagc 176  Q
    |||||||||||||| | |||||||| || ||||||||||||||| ||||||    
T  11962807 caataaaagagtgagtattaaagagcgtgttgaaaagtgagtgtcgctagc 11962857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 35151851 - 35151904
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctag 175  Q
    |||||||||||||||| |||| |||| ||||| || |||||||||||| |||||    
T  35151851 catccaataaaagagtaaatgctaaaaagagtgttaaaaagtgagtgttgctag 35151904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 2471374 - 2471414
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaag 162  Q
    |||||||||||||| |||||||| |||||||| ||||||||    
T  2471374 catccaataaaagaatgaatgttgaagagagtgttgaaaag 2471414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 31502586 - 31502643
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| ||||| ||||| | ||||||||||||||| |||||||||    
T  31502586 catccaataaaagagtgagtgttagagagactgttgaaaagtgagtgttgctagcatt 31502643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 14795189 - 14795132
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||| ||||| || || ||||||| ||||||||||||||| |||||||||    
T  14795189 catccaataaaaaagtgactgatagagagagtgttgaaaagtgagtgttgctagcatt 14795132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 15242181 - 15242124
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||| ||||| || || ||||||| ||||||||||||||| |||||||||    
T  15242181 catccaataaaaaagtgactgatagagagagtgttgaaaagtgagtgttgctagcatt 15242124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 19422956 - 19423013
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||| ||||||||| || || ||||||| ||||||||||||||| |||| ||||    
T  19422956 catccaatgaaagagtgagtgatagagagagtgttgaaaagtgagtgttgctaacatt 19423013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 22189997 - 22189940
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| || || ||||||| ||||||| |||||||  ||||||||    
T  22189997 catccaataaaagagtgagtgctagagagagtgttgaaaaatgagtgtttctagcatt 22189940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 33008162 - 33008105
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| || || ||| ||| || |||||||||||| |||||||||    
T  33008162 catccaataaaagagtgagtgctagagatagtgttcaaaagtgagtgttgctagcatt 33008105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 24539246 - 24539302
Alignment:
Q  123 atccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||||||||||||| ||||| ||||||| |  ||||| |||||| |||||||||    
T  24539246 atccaataaaagagtgagtgttagagagagtgtccaaaagagagtgtcgctagcatt 24539302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 45909584 - 45909636
Alignment:
Q  125 ccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagca 177  Q
    ||||||||||||||| ||||| ||||||| || ||||| |||||| |||||||    
T  45909584 ccaataaaagagtgagtgttagagagagtattcaaaagagagtgttgctagca 45909636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 34905394 - 34905337
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| ||||| ||||||| ||||||| ||||||| |||||||||    
T  34905394 catccaataaaagagtgagtgttagagagagtgttgaaaaatgagtgttgctagcatt 34905337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 10133280 - 10133327
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgt 169  Q
    ||||||||||| |||||| ||||| ||||||| |||||||||||||||    
T  10133280 catccaataaatgagtgagtgttagagagagtgttgaaaagtgagtgt 10133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 31116246 - 31116293
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgt 169  Q
    ||||||||| |||||||||||||| ||||||| || ||||||||||||    
T  31116246 catccaatagaagagtgaatgttagagagagtgttcaaaagtgagtgt 31116293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 8441959 - 8442016
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||||||| |||||| ||||| ||||||| ||||||| ||||||  |||||||||    
T  8441959 catccaataaatgagtgagtgttagagagagtgttgaaaaatgagtgctgctagcatt 8442016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 8450763 - 8450820
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||||||| |||||| ||||| ||||||| ||||||| ||||||  |||||||||    
T  8450763 catccaataaatgagtgagtgttagagagagtgttgaaaaatgagtgctgctagcatt 8450820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 436
Target Start/End: Complemental strand, 7067979 - 7067866
Alignment:
Q  324 atctataccaacaagatgcatctttatttcggtaatctaacatataa-gacctccatagttaagtgtgtctgacttagagtaatatttggatgggtaagc 422  Q
    |||||||||||| ||||||||||   |||| |||| ||||||||||| || || |||||||||| |||| | |||| ||||| ||||||||||||| | |    
T  7067979 atctataccaacgagatgcatctccttttcagtaacctaacatataaagaacttcatagttaagcgtgttttacttggagtagtatttggatgggtgacc 7067880  T
Q  423 ttctggaaagtttt 436  Q
    |||||  |||||||    
T  7067879 ttctgagaagtttt 7067866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 39039477 - 39039534
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| || |||| ||||| ||||||||||||||| |||||||||    
T  39039477 catccaataaaagagtgagtgctaaaaagagtgttgaaaagtgagtgttgctagcatt 39039534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 28218170 - 28218222
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagcta 174  Q
    ||||||||||||||||||||| |||||||||  ||||||| ||||||| ||||    
T  28218170 catccaataaaagagtgaatgctaaagagagggttgaaaaatgagtgttgcta 28218222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 6133746 - 6133803
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||||||||| |||| || || ||||| | ||||||||||||||| |||||||||    
T  6133746 catccaataaaagggtgagtgctagagagattgttgaaaagtgagtgttgctagcatt 6133803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 13388392 - 13388335
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||| ||||| ||||| ||||||| || ||||| |||||| |||||||||    
T  13388392 catccaataaaaaagtgagtgttagagagagtattcaaaagagagtgttgctagcatt 13388335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 25543398 - 25543341
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||| ||||||||||| | ||||| ||||||| || |||||||||||| |||||||||    
T  25543398 catcaaataaaagagtaagtgttagagagagtgtttaaaagtgagtgttgctagcatt 25543341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 26980384 - 26980441
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||| ||||||| | ||| ||||||| ||||||||||||||| | |||||||    
T  26980384 catccaataatagagtgagtattagagagagtgttgaaaagtgagtgttgttagcatt 26980441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 33060014 - 33060071
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||||||||| |||||||||  || | ||||||||||| | |||||||||    
T  33060014 catccaataaaagagtgactgttaaagaatgtatagaaaagtgagtattgctagcatt 33060071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 3872760 - 3872812
Alignment:
Q  127 aataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||| |||||||| || || ||||||| ||||||||||||||| |||||||||    
T  3872760 aatagaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcatt 3872812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 497
Target Start/End: Complemental strand, 49996614 - 49996566
Alignment:
Q  449 tgagtaaggacaaagcacactgaaataactcttgttagtttgtggggtc 497  Q
    ||||| |||||||| ||| ||||||  ||||||||||||||||||||||    
T  49996614 tgagtgaggacaaaacacgctgaaaagactcttgttagtttgtggggtc 49996566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 8109011 - 8108957
Alignment:
Q  125 ccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||||||||||| || || ||||||| ||||||||||||||| |||||||||    
T  8109011 ccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcatt 8108957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 40991711 - 40991768
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||| ||||||||| || || ||||||| ||||||||||||||| |||||||||    
T  40991711 catccaatgaaagagtgagtgatagagagagtgttgaaaagtgagtgttgctagcatt 40991768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 39471215 - 39471158
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||| |||||||||||   ||||||||||||| || |||||||||||| |||||||||    
T  39471215 catctaataaaagagttggtgttaaagagagtatttaaaagtgagtgttgctagcatt 39471158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 47237863 - 47237920
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||||||||||||||||| || ||||||| || ||||| |||||| | |||||||    
T  47237863 catccaataaaagagtgaatgctagagagagtgttcaaaagagagtgttgatagcatt 47237920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 48608137 - 48608081
Alignment:
Q  123 atccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||||||||||||||||||||||| |||  | ||||| |||||| | |||||||    
T  48608137 atccaataaaagagtgaatgttaaagaaagtacttaaaagagagtgttgttagcatt 48608081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 10666741 - 10666692
Alignment:
Q  125 ccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagcta 174  Q
    ||||||| |||||||||||||||||||||||| ||||  |||||||||||    
T  10666741 ccaataagagagtgaatgttaaagagagtcttaaaaaaagagtgtagcta 10666692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 28490844 - 28490901
Alignment:
Q  122 catccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    |||||||||||| |||||||| || ||||||| ||||||||||| ||| |||||||||    
T  28490844 catccaataaaaaagtgaatgctagagagagttttgaaaagtgactgttgctagcatt 28490901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 13975478 - 13975523
Alignment:
Q  124 tccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgt 169  Q
    |||||||||| ||||||||||||||||||| || |||| |||||||    
T  13975478 tccaataaaaaagtgaatgttaaagagagtgttcaaaaatgagtgt 13975523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 497
Target Start/End: Complemental strand, 18750186 - 18750082
Alignment:
Q  393 tgacttagagtaatatttggatgggtaagcttctggaaagttttctataaagtgtttgagtaaggacaaagcacactgaaataactcttgttagtttgtg 492  Q
    |||||| ||| ||| || |||||||| | ||||| | ||||||| || |||||||  |||| |||||||| ||||||||||  ||||  ||| |||||||    
T  18750186 tgacttggagcaattttaggatgggtgaccttctaggaagttttttagaaagtgtgcgagtgaggacaaaacacactgaaaagactcgagttggtttgtg 18750087  T
Q  493 gggtc 497  Q
    |||||    
T  18750086 gggtc 18750082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 25630860 - 25630808
Alignment:
Q  127 aataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||| ||| ||||||||||||||| ||||||||| ||| | |||||||||    
T  25630860 aataaaatagtaaatgttaaagagagtgttgaaaagtaagtattgctagcatt 25630808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 28611901 - 28611957
Alignment:
Q  123 atccaataaaagagtgaatgttaaagagagtcttgaaaagtgagtgtagctagcatt 179  Q
    ||||||| ||||||||||||||| |||||||  | |||||||||||| | |||||||    
T  28611901 atccaatgaaagagtgaatgttagagagagtgctcaaaagtgagtgttgttagcatt 28611957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University