View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16510_low_4 (Length: 461)
Name: NF16510_low_4
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16510_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 7254019 - 7253585
Alignment:
| Q |
11 |
cagagaaagttttagccccatcaaggaaaaatgttaactttgaaggtggatttgggtatgagagaaaaggatcattggaaaatgatgagagttttgagat |
110 |
Q |
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| T |
7254019 |
cagagaaagttttggccccatcaaggaaaaatgttaactttgaaggtggatttggttatgagagaaaaggatcattggaaaatgatgagagttttgagat |
7253920 |
T |
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| Q |
111 |
tgaatttcaaaaacttgtttcttgtgggagaaatgggtctttggaaaaagaagaattttttgagatggaaccaccaaaatttgcagccagaacaaagaaa |
210 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7253919 |
tgaatttcagaaacttgtttcttgtgggagaaatgggtctttggaaaaagaagaattttttgagatggaaccaccaaaatttgcagccagaacaaagaaa |
7253820 |
T |
|
| Q |
211 |
gaggctaagtttgaaggtgatttgggttatgggagaaaatggtcattggaaaaagacgaaaattttgatatggaactgcaaaaacttgtagactcagcaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7253819 |
gaggctaagtttgaaggtgatttgggttatgggagaaaagggtcattggaaaaagacgaaaattttgatatggaactgcaaaaacttgtagactcagcaa |
7253720 |
T |
|
| Q |
311 |
agaaaaaagttaactttcaaggtggttttgcttatgggagaaaagggttggtggaacaagatgaatattttgagattgaagcacaaaaatttgcaaccaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7253719 |
agaaaaaagttaactttcaaggtggttttgcttatgggagaaaagggttggtggaacaagatgaatattttgagattgaagcacaaaaatttgcaaccaa |
7253620 |
T |
|
| Q |
411 |
aacaaggaaagaggttgattttcatggtggatttg |
445 |
Q |
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| T |
7253619 |
aacaaggaaagaggttgattttcatggtggatttg |
7253585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 135 - 443
Target Start/End: Complemental strand, 7253685 - 7253380
Alignment:
| Q |
135 |
tgggagaaatgggtctttggaaaaagaagaattttttgagatggaaccaccaaaatttgcagccagaacaaagaaagaggctaagtttgaaggtgatttg |
234 |
Q |
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||||||||| |||| ||||| |||| |||| ||||||||| ||| ||| |||||||||| ||| ||||| |||||||| | | ||| | |||| || |
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| T |
7253685 |
tgggagaaaagggttggtggaacaagatgaatattttgagattgaagcacaaaaatttgcaaccaaaacaaggaaagaggttgattttcatggtggattt |
7253586 |
T |
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| Q |
235 |
ggttatgggagaaaatggtcattggaaaaagacgaaaattttgatatggaactgcaaaaacttgtagactcagcaaagaaaaaagttaactttcaaggtg |
334 |
Q |
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| T |
7253585 |
gcttatgggagaaaagggtcactggaacaagaagaaaatttggtgattgaaccacataaatttgtagcctcaacaaggaaagaggttaggtttcaaggtg |
7253486 |
T |
|
| Q |
335 |
gttttgcttatgggagaaaagggttggtggaacaagatgaatattttgagattgaagcacaaaaatttgcaaccaaaacaaggaaagaggttgattttca |
434 |
Q |
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| ||| |||||||||||||||| | |||||||||| |||||||||||||||| |||||||| ||||||||||| |||| ||||| ||| | ||||| |
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| T |
7253485 |
gattttcttatgggagaaaaggttctatggaacaaga---atattttgagattgaaccacaaaaacttgcaaccaaagcaagaaaagatgttaagtttca |
7253389 |
T |
|
| Q |
435 |
tggtggatt |
443 |
Q |
| |
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|||||||| |
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| T |
7253388 |
aggtggatt |
7253380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 135 - 444
Target Start/End: Complemental strand, 7253790 - 7253481
Alignment:
| Q |
135 |
tgggagaaatgggtctttggaaaaagaagaattttttgagatggaaccaccaaaatttgcagccagaacaaagaaagaggctaagtttgaaggtgatttg |
234 |
Q |
| |
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||||||||| ||||| ||||||||||| ||| |||||| ||||||| | |||| ||| || | | |||||||| | | ||| ||| |||||| ||| |
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| T |
7253790 |
tgggagaaaagggtcattggaaaaagacgaaaattttgatatggaactgcaaaaacttgtagactcagcaaagaaaaaagttaactttcaaggtggtttt |
7253691 |
T |
|
| Q |
235 |
ggttatgggagaaaatggtcattggaaaaagacgaaaattttgatatggaactgcaaaaacttgtagactcagcaaagaaaaaagttaactttcaaggtg |
334 |
Q |
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| T |
7253690 |
gcttatgggagaaaagggttggtggaacaagatgaatattttgagattgaagcacaaaaatttgcaaccaaaacaaggaaagaggttgattttcatggtg |
7253591 |
T |
|
| Q |
335 |
gttttgcttatgggagaaaagggttggtggaacaagatgaatattttgagattgaagcacaaaaatttgcaaccaaaacaaggaaagaggttgattttca |
434 |
Q |
| |
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| |||||||||||||||||||||| |||||||||| ||| |||| | ||||||| |||| ||||||| | || |||||||||||||||| ||||| |
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| T |
7253590 |
gatttgcttatgggagaaaagggtcactggaacaagaagaaaatttggtgattgaaccacataaatttgtagcctcaacaaggaaagaggttaggtttca |
7253491 |
T |
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| Q |
435 |
tggtggattt |
444 |
Q |
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| T |
7253490 |
aggtggattt |
7253481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 7254066 - 7254025
Alignment:
| Q |
135 |
tgggagaaatgggtctttggaaaaagaagaattttttgagat |
176 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
7254066 |
tgggagaaatgggttgttggaaaaagaagaattttttgagat |
7254025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 7254069 - 7254021
Alignment:
| Q |
342 |
ttatgggagaaaagggttggtggaacaagatgaatattttgagattgaa |
390 |
Q |
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|||||||||||| |||||| ||||| |||| |||| ||||||||||||| |
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| T |
7254069 |
ttatgggagaaatgggttgttggaaaaagaagaattttttgagattgaa |
7254021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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