View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16510_low_6 (Length: 394)
Name: NF16510_low_6
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16510_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 36 - 394
Target Start/End: Complemental strand, 51933352 - 51932993
Alignment:
| Q |
36 |
cagcacagaactaggttagcctccgaccatggcactcactttgccactgtcaccatctttaatttcagcaatcaaacatataaacttcaatctacccccc |
135 |
Q |
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| T |
51933352 |
cagcacagaactaggttagcctccgaccatggcactcactttgccactgtcaccatctttaatttcagcaatcaaacatataaacttcaatctacccccc |
51933253 |
T |
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| Q |
136 |
aattcattttctctttacaaccagaaacccaccaacaaactcttcaattcgaggacccttttctcaaaccccatcttctcaacaagagttcaagcactca |
235 |
Q |
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| T |
51933252 |
aattcattttctctttacaaccagaaacccaccaacaaactcttcaattcgaggacccttttctcaaaccccatcttctcaacaagagttcaagcactca |
51933153 |
T |
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| Q |
236 |
aatctgatggtgctggttggaagaaaagaggtaaagaatcatacagtgacagtgatgatagcgactatgaagatgacacaccaaaagaaaatgaccctta |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933152 |
aatctgatggtgctggttggaagaaaagaggtaaagaatcatacagtgacagtgatgatagcgactatgaagatgacacaccaaaagaaaatgaccctta |
51933053 |
T |
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| Q |
336 |
tgttatgactcttgaagagagacaagaatggagaag-aaaattagacaggttatggataa |
394 |
Q |
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| T |
51933052 |
tgttatgactcttgaagagagacaagaatggagaagaaaaattagacaggttatggataa |
51932993 |
T |
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