View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16510_low_7 (Length: 384)
Name: NF16510_low_7
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16510_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 39952194 - 39952550
Alignment:
| Q |
18 |
aatcatctcattcaacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952194 |
aatcatctcattcaacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgat |
39952293 |
T |
|
| Q |
118 |
ggtcatacaatttcatccactaagaaagcannnnnnnnnnnnnnnnnnnnnnnnnccatcgaaggatcaagatgtttcactataatgggtcattgtactt |
217 |
Q |
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||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
39952294 |
ggtcatataatttcatccactaagaaagcatttttcgttttattttgctctttttccattgaaggatcaagatgtttcactataacgggtcattgtactt |
39952393 |
T |
|
| Q |
218 |
caagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatcctttccgcagatgtcaatggatatggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952394 |
caagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatcctttccgcagatgtcaatggatatggt |
39952493 |
T |
|
| Q |
318 |
gtgagtagattgaactctggttttgttggtgctctaatttcgctaatcacttcattt |
374 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39952494 |
gtgagtagattgaactctggttttgttggtgctttaatttcgctaatcacttcattt |
39952550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 30339530 - 30339802
Alignment:
| Q |
18 |
aatcatctcattcaacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgat |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339530 |
aatcatttcattcaacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgat |
30339629 |
T |
|
| Q |
118 |
ggtcatacaatttcatccactaagaaagcannnnnnnnnnnnnnnnnnnnnnnnnccatcgaaggatcaagatgtttcactataatgggtcattgtactt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||||||||||| |
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| T |
30339630 |
ggtcatacaatttcatccactaagaaagcatttttcatttgattttgttctttttccattgaaggatcaagttttttcactataatgggtcattgtactt |
30339729 |
T |
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| Q |
218 |
caagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatc |
290 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30339730 |
caagcagatgtttgacaagttataacaggtcagtagtatctcaaactcttgctgattattgtttttgtatatc |
30339802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 173 - 306
Target Start/End: Original strand, 37221990 - 37222123
Alignment:
| Q |
173 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
272 |
Q |
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|
|||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221990 |
ccattgaaagatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
37222089 |
T |
|
| Q |
273 |
ttattgtttttgtatatcctttccgcagatgtca |
306 |
Q |
| |
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| |||||||||||||||||||| ||||||||||| |
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| T |
37222090 |
taattgtttttgtatatccttttcgcagatgtca |
37222123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 34230240 - 34230119
Alignment:
| Q |
173 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
272 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34230240 |
ccattgaaggatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
34230141 |
T |
|
| Q |
273 |
ttattgtttttgtatatccttt |
294 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
34230140 |
ttattgtttttgtacatccttt |
34230119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 34230367 - 34230259
Alignment:
| Q |
18 |
aatcatctcattcaacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatgaatcagaaaacatgctatgggagaatattttgctgat |
117 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
34230367 |
aatcatctcattgaacaattattaaaagtgataagtttgatgacatttatgaggtgatagatgaatcagaaaacatactataggagaatattttgctgat |
34230268 |
T |
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| Q |
118 |
ggtcataca |
126 |
Q |
| |
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||||||||| |
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| T |
34230267 |
ggtcataca |
34230259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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