View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16510_low_8 (Length: 349)

Name: NF16510_low_8
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16510_low_8
NF16510_low_8
[»] chr4 (1 HSPs)
chr4 (19-334)||(11118672-11118988)
[»] chr5 (5 HSPs)
chr5 (22-334)||(42124033-42124346)
chr5 (19-58)||(34232059-34232098)
chr5 (22-58)||(34239814-34239850)
chr5 (22-69)||(41445148-41445195)
chr5 (22-66)||(41432340-41432384)
[»] chr6 (2 HSPs)
chr6 (242-284)||(25522500-25522542)
chr6 (90-140)||(25522347-25522397)
[»] chr3 (1 HSPs)
chr3 (19-57)||(8523841-8523879)
[»] chr2 (2 HSPs)
chr2 (93-167)||(32681369-32681443)
chr2 (19-73)||(12249269-12249323)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 11118988 - 11118672
Alignment:
Q  19 agatctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttgatgtactggaaattttatccctttcaaggaatagtcagttg 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  11118988 agatctatcatcaaacaacttgagtggtgttgtcaattttaaactcttctccaaatttgctgacctggaaattttatccctttcaaggaatagtcagttg 11118889  T
Q  119 tcactaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattat-ttctgtcatattgattgagtttcacaacttacaaggag 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||  ||||| || |||||||||||||||||||    
T  11118888 tcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactcaaattatcttctgtcaacttgatcgaatttcacaacttacaaggag 11118789  T
Q  218 atttcccacgtttgcaacatctgcatctttccaataacaaacttaatggaagaatgcccaattggtttcttggaaataatttttggcaatctgtggacct 317  Q
    | || ||| |||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  11118788 aatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaattggtttcttggaaatatttattggcaatctgtggacct 11118689  T
Q  318 ctctcaaaacttgttca 334  Q
    |||||| ||||||||||    
T  11118688 ctctcataacttgttca 11118672  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 334
Target Start/End: Complemental strand, 42124346 - 42124033
Alignment:
Q  22 tctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttg-atgtactggaaattttatccctttcaaggaatagtcagttgtc 120  Q
    |||||| || ||| |||||||||||  |||||||||| |||||||||||||| ||  |||| || ||||| |||||||||||| |||||||||| || ||    
T  42124346 tctatcttcgaacgacttgagtggtcttgtcaattttcaactcttctccaaacttacatgt-ctagaaatgttatccctttcatggaatagtcaattatc 42124248  T
Q  121 actaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattat-ttctgtcatattgattgagtttcacaacttacaaggagat 219  Q
     ||||| || |||||||||| || |||||||||| ||| ||||||| || || |||| | ||||||||  |||||  | || || || |||||||||||     
T  42124247 tctaaattttgaatccaatgtcaattatagtttttctagcctacaagtattggaattgtcttctgtcaatttgatcaaattccataatttacaaggagaa 42124148  T
Q  220 ttcccacgtttgcaacatctgcatctttccaataacaaacttaatggaagaatgcccaattggtttcttggaaataatttttggcaatctgtggacctct 319  Q
    |||  |  ||||  |   ||  || ||||  ||||||||||| |||||||||||||||||||||| |||| ||| ||||  | || || | || ||||||    
T  42124147 ttcttagatttgatatcacttgatatttctgataacaaacttcatggaagaatgcccaattggttacttgaaaaaaattcattgctatttttgaacctct 42124048  T
Q  320 ctcaaaacttgttca 334  Q
    |||||||||||||||    
T  42124047 ctcaaaacttgttca 42124033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 34232059 - 34232098
Alignment:
Q  19 agatctatcatcaaacaacttgagtggtgctgtcaatttt 58  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  34232059 agatctatcatcaaacaacttgagtggtgttgtcaatttt 34232098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 34239814 - 34239850
Alignment:
Q  22 tctatcatcaaacaacttgagtggtgctgtcaatttt 58  Q
    |||||||||||||||||||||||||| ||||||||||    
T  34239814 tctatcatcaaacaacttgagtggtgttgtcaatttt 34239850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 41445195 - 41445148
Alignment:
Q  22 tctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctc 69  Q
    |||||| ||||| ||||||||||||  |||||||||||||||||||||    
T  41445195 tctatcttcaaataacttgagtggttttgtcaattttaaactcttctc 41445148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 41432384 - 41432340
Alignment:
Q  22 tctatcatcaaacaacttgagtggtgctgtcaattttaaactctt 66  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||    
T  41432384 tctatcttcaaataacttgagtggttttgtcaattttaaactctt 41432340  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 25522500 - 25522542
Alignment:
Q  242 atctttccaataacaaacttaatggaagaatgcccaattggtt 284  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  25522500 atctttccaataacaaacttgatggaagaatgcccaattggtt 25522542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 25522347 - 25522397
Alignment:
Q  90 ttttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatg 140  Q
    |||||||||||||| |||||| ||| ||||||||||| |||||||||||||    
T  25522347 ttttatccctttcatggaatactcaattgtcactaaacttcgaatccaatg 25522397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 8523879 - 8523841
Alignment:
Q  19 agatctatcatcaaacaacttgagtggtgctgtcaattt 57  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  8523879 agatctatcatcaaacaacttgagtggtgttgtcaattt 8523841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 32681369 - 32681443
Alignment:
Q  93 tatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaa 167  Q
    |||| |||||| |||||||||| ||||||||||| || |||||||||| || ||||| |||| || |||||||||    
T  32681369 tatctctttcatggaatagtcaattgtcactaaactttgaatccaatgtcagttatacttttccttacctacaaa 32681443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 12249323 - 12249269
Alignment:
Q  19 agatctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaa 73  Q
    |||| |||||||||||||||||||||||| |||  ||||| ||||||| ||||||    
T  12249323 agatttatcatcaaacaacttgagtggtgttgttgattttcaactcttttccaaa 12249269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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