View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16510_low_9 (Length: 345)
Name: NF16510_low_9
Description: NF16510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16510_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 3088767 - 3089079
Alignment:
| Q |
13 |
attattctcacagcattagcagattactatgacaaagatgtgacactcctcctccaagacattgagaaaaactataccaatgtaagtaacattatttaaa |
112 |
Q |
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| T |
3088767 |
attattctcacagcattagcagattactatgacaaagatgtgacactcctcctccaagacattgagaaaaactataccaatgtaagtaacattatttaaa |
3088866 |
T |
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| Q |
113 |
tttttctgtcactcttcctagattgaatgaacacatggattttttattggctccaaataaaatcaacttattatttcttgtatgcagggaatctggtcag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088867 |
tttttctgtcactcttcctagattgaatgaacacatggattttttattggctccaaataaaatcaacttattatttcttgtatgcagggaatctggtcag |
3088966 |
T |
|
| Q |
213 |
atgatgttgcttcttgggaacattgcaaggatatctctagttgtgtaaataagtgagcaccttttctcttccactttcaatttcagcaatctctttttgc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088967 |
atgatgttgcttcttgggaacattgcaaggatatctctagttgtgtaaataagtgagcaccttttctcttccactttcaatttcagcaatctctttttgc |
3089066 |
T |
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| Q |
313 |
ctccaaatgttaa |
325 |
Q |
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| T |
3089067 |
ctccaaatgttaa |
3089079 |
T |
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