View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_high_1 (Length: 631)
Name: NF16511_high_1
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 240 - 613
Target Start/End: Complemental strand, 9593764 - 9593391
Alignment:
| Q |
240 |
ttttgtgctttatagttccaaactagtgatgataaagcatagaaacaagtatacaatgctgcaaagtgtgacaagtggtcaagaatggaggcttctagga |
339 |
Q |
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| T |
9593764 |
ttttgtgctttatagttccaaactagtgatgataaagcatagatacaagtatacaatgctgcaaagtgtgacaagtggtcaagaatggaggtttctagga |
9593665 |
T |
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| Q |
340 |
cagagaaagaggttaagtaagaaaaaaggcactttcatttcaacctataattacatgagtcattaaataggtctgttctgacatctggtttagcatttaa |
439 |
Q |
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| T |
9593664 |
cagagaaagaggttaagtaagaaaaaaggcactttcatttcaacctataattacatgagtcattaaataggtctgttctgacatctggtttagcatttaa |
9593565 |
T |
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| Q |
440 |
ggatttataaatgaaaagaaagnnnnnnntgtggttttttgagctcctttattgtatgtctaggaagaagtagtaatcagtttcttcatccctagaaaga |
539 |
Q |
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| T |
9593564 |
ggatttataaatgaaaagaaagaaaaaaatgtggttttttgagctcctttattgtatgtctaggaagaagtagtaatcagtttcttcatccctagaaaga |
9593465 |
T |
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| Q |
540 |
aagtgtgattataggagtgtcttaatttctgtcaatttattatgccccatttcttttgtttaggaccataacta |
613 |
Q |
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| T |
9593464 |
aagtgtgattataggagtgtcttaatttctgtcaatttattatgccccatttcttttgtttaggaccataacta |
9593391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 9593986 - 9593830
Alignment:
| Q |
18 |
ataagaacaacagcaagaactcctaaaccaagattcacaaacctcaaaaccaactcagttattctaaccctcctatccaacactttcatgtttgtactat |
117 |
Q |
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| T |
9593986 |
ataagaacaactgcaagaactcctaagccaagattcacaaacctcaaaaccaactcagttattctaaccctcctatccaacactttcatgtttgtactat |
9593887 |
T |
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| Q |
118 |
gataaactggaacagttccaggactaacacctacacccaagtaactcatttttcctt |
174 |
Q |
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| T |
9593886 |
gataaactggaacagttccaggactaacacctacacccaagtaactcatttttcctt |
9593830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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