View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16511_high_15 (Length: 425)

Name: NF16511_high_15
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16511_high_15
NF16511_high_15
[»] chr5 (8 HSPs)
chr5 (27-422)||(12558689-12559084)
chr5 (59-211)||(9212332-9212483)
chr5 (59-211)||(35970268-35970419)
chr5 (59-211)||(9365057-9365208)
chr5 (59-208)||(9290790-9290941)
chr5 (59-211)||(9371408-9371558)
chr5 (62-206)||(9333136-9333276)
chr5 (64-130)||(9306955-9307021)
[»] chr8 (3 HSPs)
chr8 (59-211)||(31857548-31857700)
chr8 (59-132)||(44916590-44916663)
chr8 (64-132)||(19292871-19292939)
[»] chr7 (1 HSPs)
chr7 (59-209)||(6600816-6600965)
[»] chr4 (6 HSPs)
chr4 (59-211)||(40770883-40771035)
chr4 (59-146)||(38168863-38168950)
chr4 (59-146)||(40765083-40765170)
chr4 (59-145)||(40777660-40777746)
chr4 (59-146)||(37088298-37088385)
chr4 (64-132)||(54786837-54786905)
[»] chr6 (2 HSPs)
chr6 (59-130)||(24694523-24694594)
chr6 (139-211)||(24694839-24694910)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 27 - 422
Target Start/End: Original strand, 12558689 - 12559084
Alignment:
Q  27 caggttaaccaatatttaaaaccatctttgcattgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaact 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12558689 caggttaaccaatatttaaaaccatctttgcattgcacttggggcaatgacgcatctagtgaggttctaaccgaggcgtgtctattgctggttgaaaact 12558788  T
Q  127 atttcctgatcccctcttagacttgggtccaactcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaannnnnnnnnaaagta 226  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  12558789 atttcctgatcccctcttagacttgggtccaactcaagcctttgagaattcctggaaggattccctttggggtaaagtcctacaattttttttcaaagta 12558888  T
Q  227 aaagtcattcaacttttacagtttgctcatgctctgccgatttgctaatgttaacaatgatcttttggctacctatacaaaatattttggtagatttgct 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  12558889 aaagtcattcaacttttacagtttgctcatgctctgccgatttgctaatgttaataatgatcttttggctacctatgcaaaatattttggtagatttgct 12558988  T
Q  327 atcnnnnnnnggattttcatgtgcgaaaagtattaaggaataacaattgtctacgtacgttaatcttagtttctgcatgttatcacaggttctgct 422  Q
    |||       ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||    
T  12558989 atcttttttaggattttcatgtgcgaaaagtatgaaggaataacaattgtctacttacgttaatcttagtttctgcatgttatcatagtttctgct 12559084  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 9212483 - 9212332
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttagacttgggtccaa 158  Q
    |||| ||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | |||||||| | ||||||  |||    
T  9212483 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttgggcttggg-gcaa 9212385  T
Q  159 ctcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa 211  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  9212384 ctcaagccttcgagaatttctggaaggactccctttggggtaaagtcctacaa 9212332  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 35970419 - 35970268
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttagacttgggtccaa 158  Q
    |||| ||||||||||||| ||| ||| ||||||| |||||||| || |||||||||||||||||||||||||||  | |||||||||| |||| |  |||    
T  35970419 ttgcgcttggggcaatgacgcagctaatgaggttataaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttaggcttgag-gcaa 35970321  T
Q  159 ctcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa 211  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  35970320 ctcaagccttcgagaatttctggaaggactccttttggggtaaagtcctacaa 35970268  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 9365057 - 9365208
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttagactt-gggtcca 157  Q
    |||| ||||||||||||||||| ||| |||||| ||||||||| || |||||||||||||||||||||||||||  | || ||||||| ||| ||||  |    
T  9365057 ttgcgcttggggcaatgatgcagctaatgaggtactaaccgaggcgcgtctattgctggttgaaaactatttccaaacccactcttaggcttagggt--a 9365154  T
Q  158 actcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa 211  Q
    ||| ||||||| ||||||| ||||||||| ||| ||||||||||||||||||||    
T  9365155 acttaagcctttgagaatttctggaaggactccttttggggtaaagtcctacaa 9365208  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 208
Target Start/End: Complemental strand, 9290941 - 9290790
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttagacttgggtccaa 158  Q
    |||| ||||||||||||| ||| ||| |||||| ||||||||| || ||| |||||||||||||||||||||||  | || |||||||||| | || |||    
T  9290941 ttgcgcttggggcaatgacgcagctaatgaggtactaaccgaggcgcgtcaattgctggttgaaaactatttccaaaccctctcttagactagagttcaa 9290842  T
Q  159 ctcaagccttcgagaattcctggaaggattcccttt--ggggtaaagtccta 208  Q
    ||| || ||||||||||| ||||||||| |||||||  ||||||||||||||    
T  9290841 ctctagtcttcgagaatttctggaaggactcccttttaggggtaaagtccta 9290790  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 9371408 - 9371558
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttagactt-gggtcca 157  Q
    |||| ||||||||||||| ||| ||| |||||| ||||||||| || |||||||||||||||||||||||||||  | |||||| ||| ||| ||||  |    
T  9371408 ttgcgcttggggcaatgacgcagctaatgaggtactaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctc-taggcttagggt--a 9371504  T
Q  158 actcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa 211  Q
     || ||||||| |||||||  |||||||| ||||||||||||||| ||||||||    
T  9371505 gcttaagcctttgagaatttttggaaggactccctttggggtaaaatcctacaa 9371558  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 9333136 - 9333276
Alignment:
Q  62 cacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttagacttgggtccaactc 161  Q
    ||||||||||||||| ||| |||||||||   |||| ||| || |||||||||||||||||||||||||||  | |||||||||| ||| ||| |||||     
T  9333136 cacttggggcaatgacgcagctagtgaggaattaactgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttaggctt-ggtgcaact- 9333233  T
Q  162 aagccttcgagaattcctggaaggattccctttggggtaaagtcc 206  Q
      |||||||||||||  |||||||| |||||||  ||||||||||    
T  9333234 --gccttcgagaatttttggaaggactcccttttaggtaaagtcc 9333276  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 9306955 - 9307021
Alignment:
Q  64 cttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactattt 130  Q
    |||||| |||||||||| ||||||||||  |||||||| |  |||||||||||||||||||| ||||    
T  9306955 cttgggccaatgatgcagctagtgaggtattaaccgaggcacgtctattgctggttgaaaacaattt 9307021  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 31857700 - 31857548
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttagacttgggtccaa 158  Q
    |||| ||||||||||||| ||| ||| |||||| ||||||||| || |||||||||||||||||||||||||||  | |||||||||| | || ||  ||    
T  31857700 ttgcgcttggggcaatgacgcagctaatgaggtactaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttaggcctgagtttaa 31857601  T
Q  159 ctcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa 211  Q
    || | || |||||||||| ||||||||| ||||||||||||||||||||||||    
T  31857600 cttaggctttcgagaatttctggaaggactccctttggggtaaagtcctacaa 31857548  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 44916663 - 44916590
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcc 132  Q
    |||| ||||||||||||| | | ||| ||||||  |||| ||| || |||||||||||||||||||||||||||    
T  44916663 ttgcgcttggggcaatgacgtagctaatgaggtaataactgaggcgcgtctattgctggttgaaaactatttcc 44916590  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 19292939 - 19292871
Alignment:
Q  64 cttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcc 132  Q
    ||||||||||||| | | ||| |||||   |||| ||| || |||||||||||||||||||||||||||    
T  19292939 cttggggcaatgacgtagctaatgaggaaataactgaggcgcgtctattgctggttgaaaactatttcc 19292871  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 59 - 209
Target Start/End: Complemental strand, 6600965 - 6600816
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttagacttgggtccaa 158  Q
    |||| ||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | |||||||||| ||| ||   ||    
T  6600965 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttaggcttagg-gaaa 6600867  T
Q  159 ctcaagccttcgagaattcctggaaggattccctttggggtaaagtcctac 209  Q
    || ||||||| ||||||| ||||||||| |||||| |||||||||| ||||    
T  6600866 cttaagcctttgagaatttctggaaggactcccttaggggtaaagttctac 6600816  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 40771035 - 40770883
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttagacttgggtccaa 158  Q
    |||| ||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | |||||||||| | | |||  |     
T  40771035 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttaggccttggtttat 40770936  T
Q  159 ctcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa 211  Q
    |    ||||||||||||| ||||||||  |||| ||||||||||| |||||||    
T  40770935 ccttggccttcgagaatttctggaagggctccccttggggtaaagccctacaa 40770883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 38168863 - 38168950
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttag 146  Q
    |||| ||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | ||||||||||    
T  38168863 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttag 38168950  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 40765170 - 40765083
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttag 146  Q
    |||| ||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | ||||||||||    
T  40765170 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttag 40765083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 40777746 - 40777660
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctctta 145  Q
    |||| ||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | |||||||||    
T  40777746 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctctta 40777660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 37088385 - 37088298
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttag 146  Q
    |||| ||||||||||||| ||| ||| |||||||| |||||||  | |||||||||||||||||||||||||||  | ||||||||||    
T  37088385 ttgcgcttggggcaatgacgcagctaatgaggttccaaccgaggtgcgtctattgctggttgaaaactatttccaaaccccctcttag 37088298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 54786905 - 54786837
Alignment:
Q  64 cttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcc 132  Q
    ||||||||||||| | | ||| |||||   |||| ||| || |||||||||||||||||||||||||||    
T  54786905 cttggggcaatgacgtagctaatgaggaaataactgaggcgcgtctattgctggttgaaaactatttcc 54786837  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 24694523 - 24694594
Alignment:
Q  59 ttgcacttggggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactattt 130  Q
    |||| ||||||||||||| ||| ||| |||||||||||||||| |  |||||||||||||||||||||||||    
T  24694523 ttgcgcttggggcaatgacgcaactaatgaggttctaaccgaggcacgtctattgctggttgaaaactattt 24694594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 24694839 - 24694910
Alignment:
Q  139 cctcttagacttgggtccaactcaagccttcgagaattcctggaaggattccctttggggtaaagtcctacaa 211  Q
    ||||||| ||||||| | |||||||||||| ||||||| ||| ||||| |||||||| |||||||||||||||    
T  24694839 cctcttaaacttggggc-aactcaagcctttgagaatttctgaaaggactccctttgaggtaaagtcctacaa 24694910  T

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