View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16511_high_23 (Length: 362)

Name: NF16511_high_23
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16511_high_23
NF16511_high_23
[»] chr3 (18 HSPs)
chr3 (16-344)||(27206488-27206817)
chr3 (16-344)||(13002789-13003125)
chr3 (16-340)||(31093593-31093925)
chr3 (16-344)||(31252461-31252797)
chr3 (16-344)||(16163151-16163489)
chr3 (135-267)||(27229267-27229404)
chr3 (18-77)||(27229150-27229209)
chr3 (113-211)||(25658664-25658762)
chr3 (113-211)||(25665069-25665167)
chr3 (113-211)||(25671474-25671572)
chr3 (113-211)||(25677879-25677977)
chr3 (113-211)||(25684555-25684653)
chr3 (295-344)||(25658847-25658896)
chr3 (295-344)||(25665252-25665301)
chr3 (295-344)||(25671657-25671706)
chr3 (295-344)||(25678062-25678111)
chr3 (295-344)||(25684738-25684787)
chr3 (291-344)||(27229431-27229484)
[»] scaffold0029 (2 HSPs)
scaffold0029 (113-208)||(18364-18459)
scaffold0029 (113-208)||(43376-43471)
[»] chr2 (2 HSPs)
chr2 (113-208)||(33120609-33120704)
chr2 (113-208)||(33130352-33130447)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 27206488 - 27206817
Alignment:
Q  16 attagtcagaagaaagaagactatgataaatttggatgtttgatagcatacaactctttcataaaatacttcaatnnnnnnnnnnnnnnn--tccataaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||                 ||||||||    
T  27206488 attagtcagaagaaagaagactatgataaatttggatgtttgatagcatacaactctttcataaaatactttaataaaaaaaacttaaaaaatccataaa 27206587  T
Q  114 gacactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgtgg 213  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||||||    
T  27206588 gacactaaggcataaacaccctcaagctaagatagtatactttgacgtttacaatgatgtcaaacgtttataccaagcaccagaacaatatgg-gtgtgg 27206686  T
Q  214 agcaattattttctttcctggtttacattcatctattcttgtcaaatttatttgttcccatgcactaactttatatcaataatgcaggttttacttctga 313  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||    
T  27206687 agcaattattttctttcctggtttacattgatctattcttgtcaaatttatttgtttccatgcactaactttatatcaataatgcaggttttactttgga 27206786  T
Q  314 taaggtcgagattttgaaagcatgttgtgga 344  Q
    ||| |||||||||||||||||||||||||||    
T  27206787 taacgtcgagattttgaaagcatgttgtgga 27206817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 13003125 - 13002789
Alignment:
Q  16 attagtcagaagaaagaagactatgataaatttggatgtttgatagcatacaactctttcataaaatacttcaatnnnnnnnnnnnnnnntccataaaga 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||  ||||||| |||               |||||| |||    
T  13003125 attagtcagaagaaagaagactatgatgaatttggatgtttgatagcttacaacactctcattgaatactttaatgagcagctaaaaaaatccatagaga 13003026  T
Q  116 cactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgtggag 215  Q
    || |||  || ||||| |||||||||||||||||||| ||||| | |||||| |||| ||| | |||||| ||| |||||||||||||||||||||||||    
T  13003025 caataaaacagaaacaccctcaagctaagatagtatattttgattattacaacgatgccaagcgtttatatcaaacaccacaacaatatggtgtgtggag 13002926  T
Q  216 caattattttctttcctggtttac-----attcatctattcttgtcaaatttatttgttcccatgcactaactt---tatatcaataatgcaggttttac 307  Q
    ||||||||||||||||| ||| ||     |||  |  |||||| |||||||| |||| |||||| |||||| ||   || || ||| ||||||||||||     
T  13002925 caattattttctttccttgttaactttttattgtttaattcttatcaaatttgtttgatcccattcactaatttatgtacattaatgatgcaggttttat 13002826  T
Q  308 ttctgataaggtcgagattttgaaagcatgttgtgga 344  Q
    |||||||||||||||||||||||||||||||||||||    
T  13002825 ttctgataaggtcgagattttgaaagcatgttgtgga 13002789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 31093925 - 31093593
Alignment:
Q  16 attagtcagaagaaagaagactatgataaatttggatgtttgatagcatacaactctttcataaaatacttcaatnnnnnnnnnnnnnnntccataaaga 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||  ||||||| |||               |||||| |||    
T  31093925 attagtcagaagaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctaaaaaaatccatagaga 31093826  T
Q  116 cactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgtggag 215  Q
     | |||  || ||||| |||||||||||||||||||| ||||||| |||||| |||| ||||| |||||| |||||||||||||||||||||| ||||||    
T  31093825 taataaaacagaaacaccctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccacaacaatatggtgcgtggag 31093726  T
Q  216 caattattttctttcc-tg----gtttacattcatctattcttgtcaaatttatttgttcccatgcactaa---ctttatatcaataatgcaggttttac 307  Q
    | |||||||||||||| ||    |||| |||| || ||| ||| ||||||||||||| |||||||||||||   || |  || ||| ||||||||||||     
T  31093725 ccattattttctttccatgttaagttttcattgatttatacttatcaaatttatttgatcccatgcactaatttctgttcattaatgatgcaggttttat 31093626  T
Q  308 ttctgataaggtcgagattttgaaagcatgttg 340  Q
    ||||||||| ||||| |||||||||||||||||    
T  31093625 ttctgataaagtcgaaattttgaaagcatgttg 31093593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 31252461 - 31252797
Alignment:
Q  16 attagtcagaagaaagaagactatgataaatttggatgtttgatagcatacaactctttcataaaatacttcaatnnnnnnnnnnnnnnntccataaaga 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||  ||||||| |||               |||||| |||    
T  31252461 attagtcagaagaaagaagactatgatgaatttggatgtttgatagcttacaacactctcattgaatactttaatgagcagctaaaaaaatccatagaga 31252560  T
Q  116 cactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgtggag 215  Q
    || |||  || ||||| |||||||||||||||||||| ||||| | |||||| |||| ||| | |||||| ||| |||| ||||| ||||||||||||||    
T  31252561 caataaaacagaaacaccctcaagctaagatagtatattttgattattacaacgatgccaagcgtttatatcaaacacctcaacagtatggtgtgtggag 31252660  T
Q  216 caattattttctttcctggtttac-----attcatctattcttgtcaaatttatttgttcccatgcactaactt---tatatcaataatgcaggttttac 307  Q
    ||||||||||||||||| ||| ||     |||  | ||||||| |||||||| |||| |||||| |||||| ||   || || ||| ||||||||||||     
T  31252661 caattattttctttccttgttaactttttattgttttattcttatcaaatttgtttgatcccattcactaatttatgtacattaatgatgcaggttttat 31252760  T
Q  308 ttctgataaggtcgagattttgaaagcatgttgtgga 344  Q
    |||||||||||||||||||||||||||||||||||||    
T  31252761 ttctgataaggtcgagattttgaaagcatgttgtgga 31252797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 16163151 - 16163489
Alignment:
Q  16 attagtcagaagaaagaagactatgataaatttggatgtttgatagcatacaactctttcataaaatacttcaatnnnnnnnnnnnnnnntccataaaga 115  Q
    ||||| || |||||||| || |||||| ||||||||||||| ||||| ||||||||||||||  ||||||| |||               |||||| |||    
T  16163151 attagccaaaagaaagaggattatgatgaatttggatgtttaatagcttacaactctttcatcgaatactttaatgagcaactaaaaaaatccatagaga 16163250  T
Q  116 cactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgtggag 215  Q
    || || |||| ||||||||||||||||||||| |||| |||||||  ||||| |||| ||||| ||||||  |||||||||||||||||||| |||||||    
T  16163251 cattacggcagaaacatcctcaagctaagataatatattttgactactacaacgatgccaaacgtttatatgaagcaccacaacaatatggtctgtggag 16163350  T
Q  216 caattattttctttcct-----ggtttacattcatctattcttgtcaaatttatttgttcccat--gcactaactttat----atcaataatgcaggttt 304  Q
    ||||||||||  |||||      ||||||||| || |||||||| |||||||||||| ||||||   |||| | |||||    || ||| ||| ||| ||    
T  16163351 caattattttacttccttgttaagtttacatttatttattcttgacaaatttatttgatcccatcctcact-agtttatgtgcattaatgatgtaggctt 16163449  T
Q  305 tacttctgataaggtcgagattttgaaagcatgttgtgga 344  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  16163450 tacttctgataaggtcgaggttttgaaagcatgttgtgga 16163489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 27229267 - 27229404
Alignment:
Q  135 tcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgtggagcaattattttctttcctg- 233  Q
    |||||||| |||| |||||||||||   ||||||  |||||||| |||||| ||| ||||||||||||||| | || |||| ||||||||||||| ||      
T  27229267 tcaagctaggataatatactttgaccactacaatattgtcaaacgtttatatcaatcaccacaacaatatgatatgcggagtaattattttcttttcttt 27229366  T
Q  234 ----gtttacattcatctattcttgtcaaatttatttg 267  Q
        ||||||||| ||| |||||||||||||| |||||    
T  27229367 ccaagtttacattaatcgattcttgtcaaattcatttg 27229404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 27229150 - 27229209
Alignment:
Q  18 tagtcagaagaaagaagactatgataaatttggatgtttgatagcatacaactctttcat 77  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||| |||||||    
T  27229150 tagtcagaagaaagaagattatgatgaatttggatgtttgataacttacaacactttcat 27229209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 25658664 - 25658762
Alignment:
Q  113 agacactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgt 211  Q
    ||||| |||| |||||| | ||||||||||||||| |||| |||||||  |||||  || |||||| |||||| ||| ||||||| |||||||||||||    
T  25658664 agacattaagacataaataccctcaagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtgtgt 25658762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 25665069 - 25665167
Alignment:
Q  113 agacactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgt 211  Q
    ||||| |||| |||||| | ||||||||||||||| |||| |||||||  |||||  || |||||| |||||| ||| ||||||| |||||||||||||    
T  25665069 agacattaagacataaataccctcaagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtgtgt 25665167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 25671474 - 25671572
Alignment:
Q  113 agacactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgt 211  Q
    ||||| |||| |||||| | ||||||||||||||| |||| |||||||  |||||  || |||||| |||||| ||| ||||||| |||||||||||||    
T  25671474 agacattaagacataaataccctcaagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtgtgt 25671572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 25677879 - 25677977
Alignment:
Q  113 agacactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgt 211  Q
    ||||| |||| |||||| | ||||||||||||||| |||| |||||||  |||||  || |||||| |||||| ||| ||||||| |||||||||||||    
T  25677879 agacattaagacataaataccctcaagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtgtgt 25677977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 25684555 - 25684653
Alignment:
Q  113 agacactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtgtgt 211  Q
    ||||| |||| |||||| | ||||||||||||||| |||| |||||||  |||||  || |||||| |||||| ||| ||||||| |||||||||||||    
T  25684555 agacattaagacataaataccctcaagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtgtgt 25684653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 25658847 - 25658896
Alignment:
Q  295 atgcaggttttacttctgataaggtcgagattttgaaagcatgttgtgga 344  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  25658847 atgcaggttttatttctgataaggaagagattttgaaagcatgttgtgga 25658896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 25665252 - 25665301
Alignment:
Q  295 atgcaggttttacttctgataaggtcgagattttgaaagcatgttgtgga 344  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  25665252 atgcaggttttatttctgataaggaagagattttgaaagcatgttgtgga 25665301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 25671657 - 25671706
Alignment:
Q  295 atgcaggttttacttctgataaggtcgagattttgaaagcatgttgtgga 344  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  25671657 atgcaggttttatttctgataaggaagagattttgaaagcatgttgtgga 25671706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 25678062 - 25678111
Alignment:
Q  295 atgcaggttttacttctgataaggtcgagattttgaaagcatgttgtgga 344  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  25678062 atgcaggttttatttctgataaggaagagattttgaaagcatgttgtgga 25678111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 25684738 - 25684787
Alignment:
Q  295 atgcaggttttacttctgataaggtcgagattttgaaagcatgttgtgga 344  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  25684738 atgcaggttttatttctgataaggaagagattttgaaagcatgttgtgga 25684787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 27229431 - 27229484
Alignment:
Q  291 aataatgcaggttttacttctgataaggtcgagattttgaaagcatgttgtgga 344  Q
    ||| ||||||| |||||||||||||||||| ||||| || ||||||||||||||    
T  27229431 aatcatgcaggctttacttctgataaggtcaagattatgcaagcatgttgtgga 27229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 18459 - 18364
Alignment:
Q  113 agacactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtg 208  Q
    |||||||||| || || || ||| ||| ||||||| ||||||||||||  || ||||||| ||||| |||||| ||| |||| |||||||||||||    
T  18459 agacactaagacagaagcaccctgaagttaagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg 18364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 43471 - 43376
Alignment:
Q  113 agacactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtg 208  Q
    |||||||||| || || || ||| ||| ||||||| ||||||||||||  || ||||||| ||||  |||||| ||| |||| |||||||||||||    
T  43471 agacactaagacagaagcaccctgaagttaagataatatactttgactactataatgatgccaaatgtttatatcaaacaccgcaacaatatggtg 43376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 33120704 - 33120609
Alignment:
Q  113 agacactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtg 208  Q
    |||||||||| || || || ||| ||| ||||||| ||||||||||||  || ||||||| ||||| |||||| ||| |||| |||||||||||||    
T  33120704 agacactaagacagaagcaccctgaagttaagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg 33120609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 33130447 - 33130352
Alignment:
Q  113 agacactaaggcataaacatcctcaagctaagatagtatactttgacttttacaatgatgtcaaacatttataccaagcaccacaacaatatggtg 208  Q
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T  33130447 agacactaagacagaagcaccctgaagttaagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg 33130352  T

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