View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_high_26 (Length: 326)
Name: NF16511_high_26
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 8944832 - 8945125
Alignment:
| Q |
1 |
ctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagt |
100 |
Q |
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| T |
8944832 |
ctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagt |
8944931 |
T |
|
| Q |
101 |
ggtaaactatattcatctctaaattaacttggttagactcattatcactcatcacattatttcaatatatgaaaaatggatgcatatccttggtttattg |
200 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8944932 |
ggtaaacgatattcatctctaaattaactttgttagactcattatcactcatcacattatttcaatatatgaaaaatggatgcatatccttggtttactg |
8945031 |
T |
|
| Q |
201 |
cannnnnnntctgatacacataatttaagtaccaaaatgatttctagtattcatcagaaaacacaaataattcctataaaatatagcccaaaatc |
295 |
Q |
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| T |
8945032 |
ca-cccccctctgatacacataatttaagtaccaaaatgatttctagtattcatcagaaaacacaaataattcctataaaatatagcccaaaatc |
8945125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 8964364 - 8964272
Alignment:
| Q |
20 |
ggttttctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatat |
112 |
Q |
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||||||||||||||| |||| ||||||||||| || | | |||||||||||||| ||| ||||||||||| ||||||||||||| |||| |
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| T |
8964364 |
ggttttctttcatctacagtttcatcaatttcatttgtactttctctatttttaatttgtaattcaacttttccaattagtggtaaacgatat |
8964272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 21685541 - 21685627
Alignment:
| Q |
26 |
ctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatat |
112 |
Q |
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||||||||||||||||||||||||||| |||||| |||| | || ||||| | | ||||||||||||| ||| ||||||||| |||| |
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| T |
21685541 |
ctttcatctctagttccatcaatttcactttttctgtctattttcttaatatataattcaacttttttaattggtggtaaacgatat |
21685627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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