View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_high_29 (Length: 287)
Name: NF16511_high_29
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 29966405 - 29966203
Alignment:
| Q |
6 |
ctcagctaatgataaatttttaaaattgatggagtttttta-ggtgaatcaaactattcagtactatgaaaacaccacttccaatatttcctctaatcaa |
104 |
Q |
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| T |
29966405 |
ctcagctaatgataaatttttaaaattgatggagttttttatggtgaatcaaactattcagtactatgaaaacactacttccaatatttcctctaatcaa |
29966306 |
T |
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| Q |
105 |
attatttatttgttcctctaatttctagaattttaggcatcgcttatgttataattgcatgaaaatctgtatttatactttcacaacctaaaagttgttt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29966305 |
attatttatttgttcctctaatttctagaattttaggcatcccttatgttataattgcatgaaaatctgtatttatactttcacaacctaaaagttgtct |
29966206 |
T |
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| Q |
205 |
tga |
207 |
Q |
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||| |
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| T |
29966205 |
tga |
29966203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 30008393 - 30008595
Alignment:
| Q |
6 |
ctcagctaatgataaatttttaaaattgatggagtttttta-ggtgaatcaaactattcagtactatgaaaacaccacttccaatatttcctctaatcaa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30008393 |
ctcagctaatgataaatttttaaaattgatggagttttttatggtgaatcaaactattcagtactatgaaaacactacttccaatatttcctctaatcaa |
30008492 |
T |
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| Q |
105 |
attatttatttgttcctctaatttctagaattttaggcatcgcttatgttataattgcatgaaaatctgtatttatactttcacaacctaaaagttgttt |
204 |
Q |
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| T |
30008493 |
attatttatttgttcctctaatttctagaattttaggcatcccttatgttataattgcatgaaaatctgtatttatactttcacaacctaaaagttgtct |
30008592 |
T |
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| Q |
205 |
tga |
207 |
Q |
| |
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||| |
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| T |
30008593 |
tga |
30008595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 29965886 - 29965833
Alignment:
| Q |
218 |
aaccagtgaactaattcttcataccatggtcaacctgatgtcataggttgaatt |
271 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
29965886 |
aaccagtgaactaattcttcataccattgtgaacctgatgtcataggttgaatt |
29965833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 30008912 - 30008965
Alignment:
| Q |
218 |
aaccagtgaactaattcttcataccatggtcaacctgatgtcataggttgaatt |
271 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
30008912 |
aaccagtgaactaattcttcataccattgtgaacctgatgtcataggttgaatt |
30008965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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