View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_high_30 (Length: 283)
Name: NF16511_high_30
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_high_30 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 11453094 - 11452823
Alignment:
| Q |
12 |
aagaaatcaccagctccatcttcatcttcagaaaagaaatcaccaaaggcatcagcaccagttacaggattagatgtcccaacaatctcagatactcctc |
111 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11453094 |
aagaaatcaccagctccatcttcatcttcagtaaagaaatcaccaaaggcatcaggaccagttacaggattagatgtcccaacaatctcagatgctcctc |
11452995 |
T |
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| Q |
112 |
ccctctttgttgattcacctcctgcccaatccccagtggctgaggagcctattgtggctgtccctcctgtttccggccctgctgccggccctacatcccc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11452994 |
ccctctttgttgattcacctcctgcccaatccccagtggctgaggagcctattgtggctgtccctcctgtttccggccctgctgccggccctacatcccc |
11452895 |
T |
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| Q |
212 |
cgccgctgatgaagttagtgatgcttcttctctgaaagtatccgctgttgttgctgtcgccgcagttggttt |
283 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11452894 |
cgccgctgatgaagctagtgatgcttcttctctgaaagtatccgctgttgttgctgtcgccgcagttggttt |
11452823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 11380801 - 11380752
Alignment:
| Q |
227 |
tagtgatgcttcttctctgaaagtatccgctgttgttgctgtcgccgcag |
276 |
Q |
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| T |
11380801 |
tagtggtgcttcttctttgaaagtctccgctgttgttgctgtcgccgcag |
11380752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 11396179 - 11396130
Alignment:
| Q |
227 |
tagtgatgcttcttctctgaaagtatccgctgttgttgctgtcgccgcag |
276 |
Q |
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| T |
11396179 |
tagtggtgcttcttctttgaaagtctccgctgttgttgctgtcgccgcag |
11396130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 11396320 - 11396220
Alignment:
| Q |
50 |
atcaccaaaggcatcagcaccagttacaggattagatgtcccaacaatctcagatactcctcccctctttgttgattcacctcctgcccaatccccagtg |
149 |
Q |
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| T |
11396320 |
atcaccaaaggcatcagcaccagttgcagaagcagaatccccaaaaacctcagaggctcctaccaccttttctgattcacctcctgcccaatccccagtg |
11396221 |
T |
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| Q |
150 |
g |
150 |
Q |
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| T |
11396220 |
g |
11396220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 11404342 - 11404242
Alignment:
| Q |
50 |
atcaccaaaggcatcagcaccagttacaggattagatgtcccaacaatctcagatactcctcccctctttgttgattcacctcctgcccaatccccagtg |
149 |
Q |
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||||||||||||||||||||||||| ||| | ||| ||||| || |||||| ||||| || |||| |||||||||||||||||||||||||||| |
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| T |
11404342 |
atcaccaaaggcatcagcaccagttgcagaagcagaatccccaaaaacctcagaggctcctaccaccttttctgattcacctcctgcccaatccccagtg |
11404243 |
T |
|
| Q |
150 |
g |
150 |
Q |
| |
|
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| T |
11404242 |
g |
11404242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 11404201 - 11404152
Alignment:
| Q |
227 |
tagtgatgcttcttctctgaaagtatccgctgttgttgctgtcgccgcag |
276 |
Q |
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||||| |||||||||| ||||||| |||||| |||||||||||||||||| |
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| T |
11404201 |
tagtggtgcttcttctttgaaagtctccgctattgttgctgtcgccgcag |
11404152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 11380942 - 11380842
Alignment:
| Q |
50 |
atcaccaaaggcatcagcaccagttacaggattagatgtcccaacaatctcagatactcctcccctctttgttgattcacctcctgcccaatccccagtg |
149 |
Q |
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||||||||||||||||||||||||| ||| | ||| |||| || |||||| ||||| || |||| |||||||||||||||||||||||||||| |
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| T |
11380942 |
atcaccaaaggcatcagcaccagttgcagaagcagaatcgccaaaaacctcagaggctcctaccaccttttctgattcacctcctgcccaatccccagtg |
11380843 |
T |
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| Q |
150 |
g |
150 |
Q |
| |
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| |
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| T |
11380842 |
g |
11380842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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