View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_high_32 (Length: 264)
Name: NF16511_high_32
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 30008197 - 30007955
Alignment:
| Q |
1 |
aaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaattgcctcgggacatggaaaaagtgttttggccgtgaatccaaa |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |
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| T |
30008197 |
aaaacccacgtttgaagagaagctaccttttgaagcttctttaaatcacgttaaaaattacctcgggacgtggaaaaggtgttttggccgtgaatccaaa |
30008098 |
T |
|
| Q |
101 |
cacaccata--tctcataccaattttaaattcagnnnnnnnnnnnnnnnnnnnnnaacagaattgaaacaaatactttgagtaaaatactttgcaccata |
198 |
Q |
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||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30008097 |
cacaccatatgtcccataccaattttaaattcagtaataataataataatgataaaacagaattgaaacaaatactttgagtaaaatactttgcaccata |
30007998 |
T |
|
| Q |
199 |
ccattgatcatgaaggcatgggatatgcttgtattattcattt |
241 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30007997 |
ccattgatcatgaaggcatgtgatatgcttgtattattcattt |
30007955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 15362643 - 15362751
Alignment:
| Q |
1 |
aaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaattgcctcgggacatggaaaaagtgttttggccgtgaatccaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
15362643 |
aaaacccacgtttgaggagaagctaccttttgaagcttctttaaatcacgttaaaaattgcctcgggacgtggaaaaggtgttttggccgtgaatccaaa |
15362742 |
T |
|
| Q |
101 |
cacaccata |
109 |
Q |
| |
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||||||||| |
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|
| T |
15362743 |
cacaccata |
15362751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 34573229 - 34573121
Alignment:
| Q |
1 |
aaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaattgcctcgggacatggaaaaagtgttttggccgtgaatccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| || || ||||| |
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| T |
34573229 |
aaaacccacgtttgaggagaagctatcttttgaagcttctttaaatcacgttaaaaattgtctcgggacgtggaaaaggtgttttggctgtaaaaccaaa |
34573130 |
T |
|
| Q |
101 |
cacaccata |
109 |
Q |
| |
|
|||| |||| |
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|
| T |
34573129 |
cacatcata |
34573121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29966601 - 29966651
Alignment:
| Q |
1 |
aaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgt |
51 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
29966601 |
aaaacccacgtttgaagagaagctaccttttgaagcttctttaaatcacgt |
29966651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 36059494 - 36059391
Alignment:
| Q |
1 |
aaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaattgcctcgggacatggaaaaagtgttttggccgtgaatccaaa |
100 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||| ||||||||||||||| | | | || ||||||||||| || |||| ||||| | |||||||||||| |
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| T |
36059494 |
aaaagccacgttggaggaaaagctaccttttggagcttctttaaatcatggtgagaaatgcctcgggacgtgcaaaaggtgttcatgtcgtgaatccaaa |
36059395 |
T |
|
| Q |
101 |
caca |
104 |
Q |
| |
|
|||| |
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|
| T |
36059394 |
caca |
36059391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 4051590 - 4051487
Alignment:
| Q |
1 |
aaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaattgcctcgggacatggaaaaagtgttttggccgtgaatccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||| |
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| T |
4051590 |
aaaacccacgtttgaggagaagctaccttttgaagcttctttaaatcacgttaaaaattatctcgggacgtgaaaaaggtgttttggccgtgaatccaaa |
4051491 |
T |
|
| Q |
101 |
caca |
104 |
Q |
| |
|
|||| |
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|
| T |
4051490 |
caca |
4051487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 50501995 - 50501892
Alignment:
| Q |
1 |
aaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaattgcctcgggacatggaaaaagtgttttggccgtgaatccaaa |
100 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |||||||||||||| ||||||||||||| |||||||| || |||| ||||||| |||| |||||||| |
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| T |
50501995 |
aaaacccacgtttgaggaaaaactaccttttgaagcttctttaaattacgttaaaaattgtctcgggacgtgaaaaagatgttttgaccgtaaatccaaa |
50501896 |
T |
|
| Q |
101 |
caca |
104 |
Q |
| |
|
|||| |
|
|
| T |
50501895 |
caca |
50501892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2138481 - 2138421
Alignment:
| Q |
1 |
aaaacccacgtttgaggagaagctaccttttaaagcttctttaaatcacgttaaaaattgc |
61 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
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|
| T |
2138481 |
aaaactcacgtttgaggagaagctatcttttgaaacttctttaaatcacgttaaaaattgc |
2138421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 35239607 - 35239648
Alignment:
| Q |
9 |
cgtttgaggagaagctaccttttaaagcttctttaaatcacg |
50 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
35239607 |
cgttggaggagaagttaccttttaaagcttctttaaatcacg |
35239648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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