View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_high_33 (Length: 253)
Name: NF16511_high_33
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_high_33 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 21940920 - 21940675
Alignment:
| Q |
8 |
gactgaaatgaaggaagattgcctaaaagaccacaagaagaagctgagaaattttgaagttgcggcatagaccaaatttgtgaagggatatttcctccta |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
21940920 |
gactcaaatgaaggaagattgcctaaaagaccacaagaagatgctgagaaattttgaagttgcggcaaagaccaaatttgtgaagggatttttcctccta |
21940821 |
T |
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| Q |
108 |
atttcatattataagagacattgaaatactccaatcgagtagctagagaaatatctaaaggaatcccaccaacaaaattgttctttgacaaatcaacata |
207 |
Q |
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| T |
21940820 |
attgcatattacaagacacattgaaatactccaattgagtagcttgagaaatatctaagggaataccaccaacaaaattgttccatgacaaatcaacata |
21940721 |
T |
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| Q |
208 |
tgcaatatgaggaagatggctgaattttaaaggaatctctcctgag |
253 |
Q |
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| T |
21940720 |
tgtgatatcaggaagatggttgaagtttaaataaatctctcctgag |
21940675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 10801396 - 10801523
Alignment:
| Q |
8 |
gactgaaatgaaggaagattgcctaaaagaccacaagaagaagctgagaaattttgaagttgcggcatagaccaaatttgtgaagggatatttcctccta |
107 |
Q |
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|||| ||||||||||||||||||||||| |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
10801396 |
gactcaaatgaaggaagattgcctaaaataccacaagaatatgctgagaaattttgaagttgtggcatagaccaaatttgtgaagggatgtttcctccta |
10801495 |
T |
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| Q |
108 |
atttcatattataagagacattgaaata |
135 |
Q |
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| T |
10801496 |
attgcatattataagagacactgaaata |
10801523 |
T |
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