View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16511_high_35 (Length: 249)
Name: NF16511_high_35
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_high_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 42717131 - 42717353
Alignment:
| Q |
4 |
tcaaaaccagccaaaatatctgcatcataacatgaatcccagcaaaccttataggctgcaactcgtgcttttggtgatccaccacttaatgttccattgc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
42717131 |
tcaaaaccagccaaaatatctgcatcataacatgaatcccaacaaaccttataggctacaactcgtgcttttggcgatccaccacttgctgttccattgc |
42717230 |
T |
|
| Q |
104 |
catagccaaatacacttgcattagtaacaaaatttcctccagcagttgataaagtatgtgtaccatgaccatcattgtcccgtgcactattaaatgatac |
203 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
42717231 |
catagccaaatacacttgcattagcaacaaaatttcctccggcagttgataaagtatgtgtaccatgaccatcaatgtcacgtgcactattaaatgatac |
42717330 |
T |
|
| Q |
204 |
attgtggagacctttaccaccac |
226 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
42717331 |
actgtggagacctttaccaccac |
42717353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 42762740 - 42762942
Alignment:
| Q |
4 |
tcaaaaccagccaaaatatctgcatcataacatgaatcccagcaaaccttataggctgcaactcgtgcttttggtgatccaccacttaatgttccattgc |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
42762740 |
tcaaaaccagccaaaatgtctgcatcataacatccatcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttc |
42762839 |
T |
|
| Q |
104 |
catagccaaatacacttgcattagtaacaaaatttcctccagcagttgataaagtatgtgtaccatgaccatcattgtcccgtgcactattaaatgatac |
203 |
Q |
| |
|
||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||||||| ||| | ||||||||||||| || ||||| |
|
|
| T |
42762840 |
cattgccaaatacacttgcattagcaacgaaatttcctccagcagttgataaagtgtgtgaaccatgaccttcactatcccgtgcactatgaagcgatac |
42762939 |
T |
|
| Q |
204 |
att |
206 |
Q |
| |
|
||| |
|
|
| T |
42762940 |
att |
42762942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 42734754 - 42734559
Alignment:
| Q |
4 |
tcaaaaccagccaaaatatctgcatcataacatgaatcccagcaaaccttataggctgcaactcgtgcttttggtgatccaccacttaatgttccattgc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| | ||||||||||||||| |||||||||||| ||||||||| | |
|
|
| T |
42734754 |
tcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttc |
42734655 |
T |
|
| Q |
104 |
catagccaaatacacttgcattagtaacaaaatttcctccagcagttgataaagtatgtgtaccatgaccatcattgtcccgtgcactattaaatg |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||| || |||||||| |||| |
|
|
| T |
42734654 |
catagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcactattgaatg |
42734559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 42743756 - 42743954
Alignment:
| Q |
4 |
tcaaaaccagccaaaatatctgcatcataacatgaa---tcccagcaaaccttataggctgcaactcgtgcttttggtgatccaccacttaatgttccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42743756 |
tcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccat |
42743855 |
T |
|
| Q |
101 |
tgccatagccaaatacacttgcattagtaacaaaatttcctccagcagttgataaagtatgtgtaccatgaccatcattgtcccgtgcactattaaatg |
199 |
Q |
| |
|
| |||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||| |||| |
|
|
| T |
42743856 |
ttccattgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatg |
42743954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 42753115 - 42753313
Alignment:
| Q |
4 |
tcaaaaccagccaaaatatctgcatcataacatgaa---tcccagcaaaccttataggctgcaactcgtgcttttggtgatccaccacttaatgttccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42753115 |
tcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccat |
42753214 |
T |
|
| Q |
101 |
tgccatagccaaatacacttgcattagtaacaaaatttcctccagcagttgataaagtatgtgtaccatgaccatcattgtcccgtgcactattaaatg |
199 |
Q |
| |
|
| |||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||| |||| |
|
|
| T |
42753215 |
ttccattgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatg |
42753313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 42769674 - 42769831
Alignment:
| Q |
49 |
accttataggctgcaactcgtgcttttggtgatccaccacttaatgttccattgccatagccaaatacacttgcattagtaacaaaatttcctccagcag |
148 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||| |||||| ||||| |||||||||||||||||| | ||||||||||||||| || | |
|
|
| T |
42769674 |
accttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctcccgcgg |
42769773 |
T |
|
| Q |
149 |
ttgataaagtatgtgtaccatgaccatcattgtcccgtgcactattaaatgatacatt |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| |||||||||| |||| |||||| |
|
|
| T |
42769774 |
ttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatt |
42769831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 23040718 - 23040520
Alignment:
| Q |
4 |
tcaaaaccagccaaaatatctgcatcataacatgaatccc---agcaaaccttataggctgcaactcgtgcttttggtgatccaccacttaatgttccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
23040718 |
tcaaaaccagccaaaatatctgcatcatgacataaatccccccagcaaaccttataggctgcaactcgagcttttggtgatccaccacttgctgttcctc |
23040619 |
T |
|
| Q |
101 |
tgccatagccaaatacacttgcattagtaacaaaatttcctccagcagttgataaagtatgtgtaccatgaccatcattgtcccgtgcactattaaatg |
199 |
Q |
| |
|
||||| |||||||||||| ||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
23040618 |
ggccattgccaaatacactcgcattagcaacgaaatttcctccaacagttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgaatg |
23040520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University