View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_high_37 (Length: 239)
Name: NF16511_high_37
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 11452760 - 11452579
Alignment:
| Q |
1 |
ttgtgctatgttgtgtttgtgaaatgtgcatgatcatatataatattcaatatgatt--------ataatatcaagagtttcagattatttattgttcca |
92 |
Q |
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| T |
11452760 |
ttgtgctatgttgtgtttgtgaaatgtgcatgatcatatataatattcaatatgattataaatttataatatcaagagtttcagattatttattgttcca |
11452661 |
T |
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| Q |
93 |
ttcattgaaaaggtnnnnnnnnttcaaagagaatagaggtgacgatcgtccttaaatcgaaaccaaatgctcatttttaaatt |
175 |
Q |
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| T |
11452660 |
ttcattgaaaaggt-aaaaaaattcaaagagaatagaggtgatgatcgtccttaaatcaaaaccaaatgctcattttttaatt |
11452579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 11380612 - 11380477
Alignment:
| Q |
39 |
tataatattcaatatgattataatatcaagagtttcagattatttattgttccattcattgaaaaggtnnnnnnnnttcaaagagaatagaggtgacgat |
138 |
Q |
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| T |
11380612 |
tataatattgaatatgattataatatcaagagtttcagattatttattgttccattcattgaaaagg-caacaaaattcaaagagaatagagttgttgat |
11380514 |
T |
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| Q |
139 |
cgtccttaaatcgaaaccaaatgctcatttttaaatt |
175 |
Q |
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| T |
11380513 |
cgtccttaaatcaaaatcaaatgctcattttttaatt |
11380477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 11404012 - 11403880
Alignment:
| Q |
39 |
tataatattcaatatgattataatatcaagagtttcagattatttattgttccattcattgaaaaggtnnnnnnnnttcaaagagaatagaggtgacgat |
138 |
Q |
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| T |
11404012 |
tataatattgaatatgattataatatcaagagtttcagattatttattgttccattcattgaaatggtaaaaaacaatccaagagaatagtggtgatgat |
11403913 |
T |
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| Q |
139 |
cgtccttaaatc-gaaaccaaatgctcattttt |
170 |
Q |
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| T |
11403912 |
cgtccttaaatcaaaaaccaaatgcacattttt |
11403880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11396053 - 11396016
Alignment:
| Q |
1 |
ttgtgctatgttgtgtttgtgaaatgtgcatgatcata |
38 |
Q |
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| T |
11396053 |
ttgtgctatgttgtgtttgtgaaatgtgcatgatcata |
11396016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11404075 - 11404038
Alignment:
| Q |
1 |
ttgtgctatgttgtgtttgtgaaatgtgcatgatcata |
38 |
Q |
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| T |
11404075 |
ttgtgctatgttgtgtttgtgaaatgtgcatgatcata |
11404038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11380675 - 11380638
Alignment:
| Q |
1 |
ttgtgctatgttgtgtttgtgaaatgtgcatgatcata |
38 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
11380675 |
ttgtgctatattgtgtttgtgaaatgtgcatgatcata |
11380638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 11395990 - 11395962
Alignment:
| Q |
39 |
tataatattcaatatgattataatatcaa |
67 |
Q |
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| T |
11395990 |
tataatattcaatatgattataatatcaa |
11395962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 35401208 - 35401090
Alignment:
| Q |
56 |
ttataatatcaagagtttcagattatttattgttccattcattgaaaaggtnnnnnnnnttcaaagagaatagaggtgacgatcgtccttaaatcgaaac |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| | ||| ||| ||||||||||| |||| |
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| T |
35401208 |
ttataatatcaagagtttcagattatttattgttccattaattgaaaaggtaaaaaaaattcaaagagactagtgatgatgat-gtccttaaatcaaaac |
35401110 |
T |
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| Q |
156 |
caaatgctcatttttaaatt |
175 |
Q |
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| T |
35401109 |
caaatgcccagtttttaatt |
35401090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35401334 - 35401296
Alignment:
| Q |
1 |
ttgtgctatgttgtgtttgtgaaatgtgcatgatcatat |
39 |
Q |
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| T |
35401334 |
ttgtgctatgttgtgtttgtgaaatgtgcatgatcatat |
35401296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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