View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_high_6 (Length: 556)
Name: NF16511_high_6
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 31719821 - 31719333
Alignment:
| Q |
18 |
tgaactgaagtaggttttgttttattagttagaaacttagaactagatatggagcagtatgaagtactagaacaaattggtaagggttcttttgcttctg |
117 |
Q |
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| T |
31719821 |
tgaagtgaagtaggttttgttttattagttagaaacttagaactagatatggagcagtatgaagtactagaacaaattggtaagggttcttttgcttctg |
31719722 |
T |
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| Q |
118 |
ctttgcttgtaagacacaagcatgaaaacaaaaggtgatgttctaactctttgttactataatgtgttctttgaagtttatttaagagtttaagtaatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31719721 |
ctttgcttgtaagacacaagcatgaaaacaaaaggtgatgttctaactctttgttactataatgtgttctttcaagtttatttaagagtttaagtaatgt |
31719622 |
T |
|
| Q |
218 |
gtttgtttttcattatgattagtataagctaggtagctaattaacatatag------------ttttaatttaatgtgtttaggtatgtgctgaagaaga |
305 |
Q |
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| T |
31719621 |
gtttgtttttcattatgattagtata----aggtagctaattaacatatagttttttttttttttttaatttaatgtgtttaggtatgtgctgaagaaga |
31719526 |
T |
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| Q |
306 |
tccgtcttgcccggcagacagacagaatccgtagatctgctcaccaggaggttacttacactccttctttgtagcttcataagttaatttaatgatgttt |
405 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719525 |
tccgtcttgcccggcagtcagacagaatccgtagatctgctcaccaggaggttacttacactccttctttgtagcttcataagttaatttaatgatgttt |
31719426 |
T |
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| Q |
406 |
agcttaggttatttttagtcaaaatgtgacattggaactttatgttaannnnnnnataatttctatttattgctaaataatgtaaaatgtggaa |
499 |
Q |
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| T |
31719425 |
agcttaggttatttttagtcaaaatgtgacattggaactttatgttaa-ttttttataatttctatttattgctaaataatgtaaaatgtggaa |
31719333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 31719318 - 31719267
Alignment:
| Q |
488 |
taaaatgtggaacttggaaacttattttgtcttgctaagtttattattagat |
539 |
Q |
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| T |
31719318 |
taaaatgtggaacttggaaacttattttgtcttgctaagtttattattagat |
31719267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 36070642 - 36070566
Alignment:
| Q |
66 |
atggagcagtatgaagtactagaacaaattggtaagggttcttttgcttctgctttgcttgtaagacacaagcatga |
142 |
Q |
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| T |
36070642 |
atggagcagtatgaagtacttgagcaaattggaaaaggtgcttttggttcagctcttcttgtgagacataaacatga |
36070566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 38241380 - 38241469
Alignment:
| Q |
66 |
atggagcagtatgaagtactagaacaaattggtaagggttcttttgcttctgctttgcttgtaagacacaagcatgaaaacaaaaggtga |
155 |
Q |
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| T |
38241380 |
atggagcagtatgaagttctagaacagattggtaaaggtgcatttggttgtgctttacttgtgaggcacaagcatgaaaagaaaaagtga |
38241469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 38241609 - 38241681
Alignment:
| Q |
285 |
ttaggtatgtgctgaagaagatccgtcttgcccggcagacagacagaatccgtagatctgctcaccaggaggt |
357 |
Q |
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| T |
38241609 |
ttaggtatgtcctcaagaagatccgtcttgctcgccaaactgacagaacccgtaggtcggcccatcaggaggt |
38241681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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