View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16511_low_10 (Length: 526)
Name: NF16511_low_10
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 13 - 508
Target Start/End: Complemental strand, 37446640 - 37446159
Alignment:
| Q |
13 |
tattattctcttttcaacgactttatcaagagtagtaatatgtgcaacatgtacatttgttttatatgcaataaaataatatattcattttgttagttaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37446640 |
tattattctcttttcaacgactttatcaagagtag---------caacatgtacatttgttttatatgcaataaa-taatatattcattttgttagttaa |
37446551 |
T |
|
| Q |
113 |
agaagaatgaatatgtacgtaccaaaattttagaatgagggagtaatagagtgatttgattcatgttatgttctagttaaaacattagattaatttggtg |
212 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37446550 |
aaaagaatgaatatgtac----caaaattttagaatgagggagtaatagagtgatttgattcatgttatgttctagttaaaacataagattaatttggtg |
37446455 |
T |
|
| Q |
213 |
tgtttaatgattggtgtacaatacgatacgtctacgcttttgttgatgtagtatatagtgagttggaaattgtacagtgtaaggggataagaagcttcta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37446454 |
tgtttaatgattggtgtacaatacgatacgtctacgcttttgttgatgtagtatatagtgagttggaaattgtacagtgtaaggggataagaagcttcta |
37446355 |
T |
|
| Q |
313 |
ctttagaagtttttatctcaaattgccttttatctttataacaatcaagtgggtgcgccttttcaaaataaaacaaaaatcattgataacattcataatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37446354 |
ctttagaagtttttatctcaaattgccttttatctttataacaatcaagtgggtgcgccttttcaaaataaaacaaaaatcattgataacattcataatt |
37446255 |
T |
|
| Q |
413 |
tcatatactatataaacaaacccgatcaagagaaatataaacacacacattcagagtcacacaccaataacatacattatcgatcttagttgagtc |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37446254 |
tcatatactatataaacaaacccgatcaagagaaatataaacacacatattcagagtcacacaccaataacatacattatcgatcttagttgagtc |
37446159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University