View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_11 (Length: 498)
Name: NF16511_low_11
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 477
Target Start/End: Original strand, 43033641 - 43034095
Alignment:
| Q |
15 |
cagagagcaacaatgaatccactatgagcataaacaaaccagtacaataaagtttacatggtcccttgctttccattgttgagaaacagcccaacaaaaa |
114 |
Q |
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| T |
43033641 |
cagagagcaacaatgaatccactatgagcataaacaaaccagtacaataaagtttacatggtcccttgctttccattgttgagaaacagcccaacaaaaa |
43033740 |
T |
|
| Q |
115 |
tctctaaatctctttcgacc-tctattttcactcttcctttgatttctcagtctctctaatattcttttgtcatgtagagagtttacatgaattcctcac |
213 |
Q |
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| T |
43033741 |
tctctaaatccctttcgaccctctattttcactcttcctttgatttctcagtctctctaatattcttttgtcatgtagagagtttacatgaattcctcac |
43033840 |
T |
|
| Q |
214 |
ttcacacctcaaagtgtttcctaagattactccaagattattctccaa-gtctacccacagagatgccctatgattcttacatggacgcgtgaatacaag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43033841 |
ttcacacctcaaagtgtttcctaagattactccaagattattctccaaagtctacccacagagatgccctatgattcttacatggacgcatgaatacaag |
43033940 |
T |
|
| Q |
313 |
cagccgctcataacataattagtggcaccaactatggttagtaactatgtaacaaagttgtaactgaattaataccctcttcagatgttgcagcacctgg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43033941 |
cagccgctcataacataattagtggcaccaactatggttagtaactatgtaacaaagttgtaactgaattaataccctcttcagatgtt----------g |
43034030 |
T |
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| Q |
413 |
cagcacttatgcttgtacaagtttgtgagacacttcaacattcttgagaagtgtgaaaacgaact |
477 |
Q |
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| T |
43034031 |
cagcacttacgcttgtacaagtttgtgagacacttcaacattcttgagaagtgtgaaaatgaact |
43034095 |
T |
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