View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16511_low_12 (Length: 493)

Name: NF16511_low_12
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16511_low_12
NF16511_low_12
[»] chr4 (14 HSPs)
chr4 (17-479)||(33997853-33998316)
chr4 (378-479)||(8747691-8747792)
chr4 (378-436)||(8749046-8749104)
chr4 (378-436)||(8896953-8897011)
chr4 (376-436)||(48157678-48157738)
chr4 (378-434)||(40168639-40168695)
chr4 (371-434)||(9397437-9397500)
chr4 (379-434)||(40169781-40169836)
chr4 (378-434)||(1961172-1961228)
chr4 (377-433)||(9178634-9178690)
chr4 (374-434)||(25011731-25011791)
chr4 (378-434)||(31435854-31435909)
chr4 (378-434)||(55780387-55780443)
chr4 (378-434)||(55844567-55844623)
[»] chr2 (10 HSPs)
chr2 (376-479)||(27553764-27553867)
chr2 (378-479)||(27552452-27552553)
chr2 (378-436)||(12812836-12812894)
chr2 (376-434)||(28851674-28851732)
chr2 (378-479)||(10851913-10852013)
chr2 (377-425)||(24192244-24192291)
chr2 (378-434)||(45413479-45413535)
chr2 (376-434)||(1389231-1389289)
chr2 (449-479)||(28617993-28618023)
chr2 (378-479)||(45412335-45412436)
[»] chr3 (11 HSPs)
chr3 (376-479)||(10584039-10584142)
chr3 (376-479)||(32829738-32829841)
chr3 (376-434)||(26722531-26722589)
chr3 (378-434)||(26723906-26723962)
chr3 (376-436)||(51219460-51219520)
chr3 (378-479)||(51220560-51220660)
chr3 (378-479)||(32831047-32831148)
chr3 (378-436)||(53157176-53157233)
chr3 (378-434)||(21326320-21326376)
chr3 (378-434)||(40630627-40630683)
chr3 (378-434)||(54539500-54539556)
[»] chr7 (5 HSPs)
chr7 (378-479)||(9805383-9805484)
chr7 (376-479)||(35080281-35080384)
chr7 (378-479)||(35081558-35081659)
chr7 (378-427)||(23621990-23622039)
chr7 (378-434)||(12961984-12962040)
[»] chr1 (13 HSPs)
chr1 (115-228)||(6230075-6230188)
chr1 (376-479)||(46525799-46525902)
chr1 (378-436)||(46312065-46312123)
chr1 (378-479)||(3000170-3000271)
chr1 (380-479)||(46524542-46524641)
chr1 (378-425)||(14512669-14512716)
chr1 (376-479)||(2999489-2999591)
chr1 (378-479)||(14204837-14204939)
chr1 (378-436)||(50379972-50380030)
chr1 (373-434)||(43706901-43706962)
chr1 (378-434)||(2425471-2425527)
chr1 (378-434)||(28920899-28920955)
chr1 (378-434)||(46313276-46313332)
[»] chr6 (8 HSPs)
chr6 (376-436)||(22417656-22417716)
chr6 (373-479)||(22418894-22419000)
chr6 (370-434)||(6978139-6978203)
chr6 (378-434)||(20409067-20409123)
chr6 (378-433)||(12181595-12181650)
chr6 (376-426)||(10120173-10120223)
chr6 (397-434)||(15888990-15889027)
chr6 (378-434)||(20410219-20410275)
[»] chr5 (11 HSPs)
chr5 (376-479)||(5504093-5504196)
chr5 (378-436)||(124529-124587)
chr5 (378-431)||(3597323-3597376)
chr5 (378-479)||(5502918-5503018)
chr5 (376-434)||(3598924-3598982)
chr5 (378-479)||(121349-121450)
chr5 (377-436)||(14189663-14189722)
chr5 (378-436)||(14190487-14190545)
chr5 (376-434)||(17414542-17414600)
chr5 (376-430)||(17415695-17415749)
chr5 (378-434)||(8061856-8061912)
[»] chr8 (4 HSPs)
chr8 (378-479)||(13882655-13882756)
chr8 (378-426)||(13883878-13883926)
chr8 (378-434)||(38612219-38612275)
chr8 (378-434)||(38613419-38613475)
[»] scaffold1875 (1 HSPs)
scaffold1875 (378-434)||(756-812)


Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Complemental strand, 33998316 - 33997853
Alignment:
Q  17 tcacttacaatagtgctattgtgcttcctaacttcatcttg-acagattgaaaattgattcctttaaatgaagctttgatgaggtttctctattgtgact 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998316 tcacttacaatagtgctattgtgcttcctaacttcatcttggacagattcaaaattgattcctttaaatgaagctttgatgaggtttctctattgtgact 33998217  T
Q  116 tgcattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctctttccaagctccatacttataccatacggatcccataactat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  33998216 tgcattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctcttttcaagctccacacttataccatacggatcccataactat 33998117  T
Q  216 gttccttcaacacaaaagatttcaagttcataagggtgatgatatgttgttgccttcagaaatcagaacctgcattattcacagcactctttctcaagag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998116 gttccttcaacacaaaagatttcaagttcataagggtgatgatatgttgttgccttcagaaatcagaacctgcattattcacagcactctttctcaagag 33998017  T
Q  316 aatgcttgataatcactttatagctctttctgtcattgcccaaaactttcgcaaattatcttggctaaactacagttttgaccccctaagtttgctaatg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33998016 aatgcttgataatcactttatagctctttctgtcattgcccaaaactttcgcaaattatcttggctaaactacagttttgaccccctaagtttgctaatg 33997917  T
Q  416 ttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccctttgc 479  Q
    ||||||||||| |||||||||        |||||||||||||||||||||||||||||||||||    
T  33997916 ttgcgattttgaccccctaataaaaaaaatgaaaattttgccccctaagatttagcccctttgc 33997853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 8747691 - 8747792
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||        |||| ||||||||||||| | ||||||||||||    
T  8747691 ggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 8747790  T
Q  478 gc 479  Q
    ||    
T  8747791 gc 8747792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 8749104 - 8749046
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  8749104 ggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8749046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 8897011 - 8896953
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    |||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||||    
T  8897011 ggctaaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaat 8896953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 48157738 - 48157678
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||||| ||||||||||||||||| |||  ||| | ||||||||||||||||||||    
T  48157738 ttggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggccccctaat 48157678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 40168639 - 40168695
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  40168639 ggctaaactgcagttttgaccccctaacttttacaatggtgcgattttggcccccta 40168695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 434
Target Start/End: Complemental strand, 9397500 - 9397437
Alignment:
Q  371 ttatcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||| ||||||||||| || |||| |||||||||||||   ||||||| |||||||||||||||    
T  9397500 ttattttggctaaactgcacttttcaccccctaagttttaaaatgttgggattttggcccccta 9397437  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 40169836 - 40169781
Alignment:
Q  379 gctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  40169836 gctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 40169781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 1961228 - 1961172
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||| | || |||| ||||||||||||||| || ||||| ||||||||||||||    
T  1961228 ggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggcccccta 1961172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 433
Target Start/End: Original strand, 9178634 - 9178690
Alignment:
Q  377 tggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccct 433  Q
    |||||||||| ||||||||||| ||||| |||  ||| | |||||||||||||||||    
T  9178634 tggctaaactgcagttttgacctcctaactttcataaaggtgcgattttggccccct 9178690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 25011731 - 25011791
Alignment:
Q  374 tcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||||| || ||||   |||||||||||   |||||||||||||||||||||||    
T  25011731 tcttggctaaactccacttttcgtcccctaagtttcaaaatgttgcgattttggcccccta 25011791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 31435909 - 31435854
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||||||||| |||  || |||||| ||||||||||||||| |||||||    
T  31435909 ggctaaactacagttttggccct-tatgtttgccaatgttgcgattttgacccccta 31435854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 55780387 - 55780443
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| || ||||  |||| ||||||| | |||||||||||||||||||||||    
T  55780387 ggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggcccccta 55780443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 55844567 - 55844623
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| || ||||  |||| ||||||| | |||||||||||||||||||||||    
T  55844567 ggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggcccccta 55844623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 376 - 479
Target Start/End: Complemental strand, 27553867 - 27553764
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||    
T  27553867 ttggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggcctcctaataaaaaaaatgaaaattttgccccctaagatttagcccct 27553768  T
Q  476 ttgc 479  Q
    ||||    
T  27553767 ttgc 27553764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 27552452 - 27552553
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||        ||||||||| ||||||||||||||| |||||||    
T  27552452 ggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaataaaaaaaatgaaaatttagccccctaagatttaaccccttt 27552551  T
Q  478 gc 479  Q
    ||    
T  27552552 gc 27552553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 436
Target Start/End: Original strand, 12812836 - 12812894
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  12812836 ggctaagctacagttttgacctcttaagtttgctaatgttgagattttggccccctaat 12812894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 28851732 - 28851674
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||| ||||||||||||||||| |||   ||||||||||||||| |||||||    
T  28851732 ttggctaaactgcagttttgaccccctaactttcacaatgttgcgattttgacccccta 28851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 10851913 - 10852013
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||||||| |||   ||||||||||||||  |||||| ||        |||||||||| ||||||| | ||||||||||||    
T  10851913 ggctaaactacagttttgaccccctaactttatcaatgttgcgattttaaccccct-attaaaaaaatgaaaattttaccccctatgttttagccccttt 10852011  T
Q  478 gc 479  Q
    ||    
T  10852012 gc 10852013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 24192244 - 24192291
Alignment:
Q  377 tggctaaactacagttttgaccccctaagtttgctaatgttgcgatttt 425  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  24192244 tggctaaactacagttttggcccca-aagtttgctaatgttgcgatttt 24192291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 45413535 - 45413479
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  45413535 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 45413479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 1389231 - 1389289
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  1389231 ttggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 1389289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 449 - 479
Target Start/End: Original strand, 28617993 - 28618023
Alignment:
Q  449 aattttgccccctaagatttagcccctttgc 479  Q
    |||||||||||||||||||||||||||||||    
T  28617993 aattttgccccctaagatttagcccctttgc 28618023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 45412335 - 45412436
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||| ||||||||||||||||| |||   |||| |||||||||| ||||||| |        |||||||||   |||||| ||||||||||||||    
T  45412335 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgaccccctattaaaaaaaatgaaaatttaaacccctatgatttagccccttt 45412434  T
Q  478 gc 479  Q
    ||    
T  45412435 gc 45412436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 376 - 479
Target Start/End: Complemental strand, 10584142 - 10584039
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||        | ||||||| |||||||||||||||||||||    
T  10584142 ttggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaataaaaaaaattaaaatttggccccctaagatttagcccct 10584043  T
Q  476 ttgc 479  Q
    ||||    
T  10584042 ttgc 10584039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 376 - 479
Target Start/End: Original strand, 32829738 - 32829841
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||        |||| ||||||||||||| | ||||||||||    
T  32829738 ttggctaaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaataaaaaaaatgaatattttgccccctatgttttagcccct 32829837  T
Q  476 ttgc 479  Q
    ||||    
T  32829838 ttgc 32829841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 26722531 - 26722589
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  26722531 ttggctaaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 26723962 - 26723906
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  26723962 ggctaaactacagttttggccccctaagtttactaatgttgcaattttggcccccta 26723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 51219460 - 51219520
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||    
T  51219460 ttggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggccccctaat 51219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 51220660 - 51220560
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||        |||| ||||||||||||| | ||||||||||||    
T  51220660 ggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaat-aaaaaaatgaatattttgccccctatgttttagccccttt 51220562  T
Q  478 gc 479  Q
    ||    
T  51220561 gc 51220560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 32831148 - 32831047
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| ||| |||||        ||||  |||||||||||| | ||||||||||||    
T  32831148 ggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttgaccctctaataaaaaaaatgaattttttgccccctatgttttagccccttt 32831049  T
Q  478 gc 479  Q
    ||    
T  32831048 gc 32831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 53157233 - 53157176
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |||||    
T  53157233 ggctaaactacagttttgacccc-taagtttgccaatgttgcgattctggccctctaat 53157176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 21326320 - 21326376
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||| |||||||||| ||||||| | ||| |||| ||||||| ||||||    
T  21326320 ggctaaactacacttttgaccccttaagtttaccaatattgcaattttggtccccta 21326376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 40630683 - 40630627
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||| | || |||| ||||||||||||||| || ||||| ||||||||||||||    
T  40630683 ggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggcccccta 40630627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 54539556 - 54539500
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||| ||||| ||| ||||  |||| ||||||||||||||||||    
T  54539556 ggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggcccccta 54539500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 9805484 - 9805383
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||        ||||||||| ||||||| |||||||||||||||    
T  9805484 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggccctctaatagaaaaaatgaaaatttggccccctgagatttagccccttt 9805385  T
Q  478 gc 479  Q
    ||    
T  9805384 gc 9805383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 376 - 479
Target Start/End: Original strand, 35080281 - 35080384
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||        |||| ||||||||||||| | ||||||||||    
T  35080281 ttggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaataaaaaaaatgaatattttgccccctatgttttagcccct 35080380  T
Q  476 ttgc 479  Q
    ||||    
T  35080381 ttgc 35080384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 35081659 - 35081558
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||        |||| ||||||||||||| | ||||||||||||    
T  35081659 ggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 35081560  T
Q  478 gc 479  Q
    ||    
T  35081559 gc 35081558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 23622039 - 23621990
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgg 427  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  23622039 ggctaaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 12961984 - 12962040
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  12961984 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggcccccta 12962040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 6230188 - 6230075
Alignment:
Q  115 ttgcattgaaagatttagcatcaattgcacctaaatgcttgtagggaccaatgtctctctttccaagctccatacttataccatacggatcccataacta 214  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||  |||| ||  || |||||||| ||||| ||||     
T  6230188 ttgcattgaaagatttagcatcaattgcacataaatgcttgtagggaccaatatccctccttccaaattccagacagatgccatacgggtcccaaaactc 6230089  T
Q  215 tgttccttcaacac 228  Q
    ||||||||||||||    
T  6230088 tgttccttcaacac 6230075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 376 - 479
Target Start/End: Complemental strand, 46525902 - 46525799
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||        ||||||||| |||||||||||||||||||||    
T  46525902 ttggctaatctacagttttggccccctaagtttgccaatgttgcgattttggcctcctaataaaaaaaatgaaaatttggccccctaagatttagcccct 46525803  T
Q  476 ttgc 479  Q
    ||||    
T  46525802 ttgc 46525799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 436
Target Start/End: Original strand, 46312065 - 46312123
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaat 46312123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 3000271 - 3000170
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||  || |||||        | |||||||||||||||||| ||||||||||||    
T  3000271 ggctaaactacagttttgaccccttaattttgttaatgttgcgattttgatcctctaataaaaaaaataaaaattttgccccctaagttttagccccttt 3000172  T
Q  478 gc 479  Q
    ||    
T  3000171 gc 3000170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 380 - 479
Target Start/End: Original strand, 46524542 - 46524641
Alignment:
Q  380 ctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccctttgc 479  Q
    |||||||||||||||| |||||||||||| | |||||||| ||||||| ||||| ||        | ||||||| |||||||||||||||||||||||||    
T  46524542 ctaaactacagttttggccccctaagtttaccaatgttgcaattttggtcccctgataaaaaaaataaaaatttggccccctaagatttagcccctttgc 46524641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 425
Target Start/End: Complemental strand, 14512716 - 14512669
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgatttt 425  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  14512716 ggctaaactacagttttggccccctaagtttactaatgttgcgatttt 14512669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 479
Target Start/End: Original strand, 2999489 - 2999591
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    |||||||||||||||||||||||| |||| ||||  |||||||||||||||  ||||||||        ||||||||||| |||||||  ||||||||||    
T  2999489 ttggctaaactacagttttgaccctctaactttgtcaatgttgcgattttgatcccctaat-aaaaaaatgaaaattttgacccctaaattttagcccct 2999587  T
Q  476 ttgc 479  Q
    ||||    
T  2999588 ttgc 2999591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 14204837 - 14204939
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgcccc-ctaagatttagcccctt 476  Q
    |||||||||||||||||| |||| || |||||  |||| |||||||||||||| |||||        |||||||||| |||| |||||||||||||||||    
T  14204837 ggctaaactacagttttggccccttatgtttgacaatgctgcgattttggccctctaataaaaatattgaaaattttacccctctaagatttagcccctt 14204936  T
Q  477 tgc 479  Q
    |||    
T  14204937 tgc 14204939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 50380030 - 50379972
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  50380030 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 50379972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 43706962 - 43706901
Alignment:
Q  373 atcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||||| || ||||  |||||||| |||   |||||||||||||||||||||||    
T  43706962 atcttggctaaactccactttttgccccctaatttttaaaatgttgcgattttggcccccta 43706901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 2425527 - 2425471
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| || ||||  ||||||| ||||  ||||||||||||||||||||||||    
T  2425527 ggctaaactgcactttttgccccctatgtttcataatgttgcgattttggcccccta 2425471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 28920955 - 28920899
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| || ||||  ||||||||||||   |||||||||||||||||||||||    
T  28920955 ggctaaacttcacttttcgccccctaagtttcaaaatgttgcgattttggcccccta 28920899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 46313332 - 46313276
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   || | ||||||||||||||||||    
T  46313332 ggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttggcccccta 46313276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 22417656 - 22417716
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22417656 ttggttaaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaat 22417716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 373 - 479
Target Start/End: Complemental strand, 22419000 - 22418894
Alignment:
Q  373 atcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcc 472  Q
    |||| ||||||||||| |||||| |||||||||||||  |||||| ||||||| | ||||||||        ||||||||||||||||||||||||||||    
T  22419000 atctaggctaaactacggttttggccccctaagtttgtcaatgttacgatttttgtcccctaataaaaaaaatgaaaattttgccccctaagatttagcc 22418901  T
Q  473 cctttgc 479  Q
    |||||||    
T  22418900 cctttgc 22418894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 6978203 - 6978139
Alignment:
Q  370 attatcttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||||||||| ||||||| ||||||||| |||   |||| |||||||||||| |||||    
T  6978203 attatcttggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggctcccta 6978139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 20409067 - 20409123
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||| ||||||||||||||||||    
T  20409067 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 20409123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 433
Target Start/End: Original strand, 12181595 - 12181650
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccct 433  Q
    ||||||||| ||||||||||| ||||| ||||  ||||||| ||||||||||||||    
T  12181595 ggctaaactgcagttttgacctcctaactttgtaaatgttgggattttggccccct 12181650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 10120173 - 10120223
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttg 426  Q
    |||||||||| ||| ||||| |||||||||||||  |||||||||||||||    
T  10120173 ttggctaaacaacaattttggccccctaagtttgtcaatgttgcgattttg 10120223  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Original strand, 15888990 - 15889027
Alignment:
Q  397 ccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  15888990 ccccctaagtttgcaaatgttgcaattttggcccccta 15889027  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 20410275 - 20410219
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||| |||||||||| |||||||    
T  20410275 ggctaaactgcagttttgaccccctaacttttacaatggtgcgattttgacccccta 20410219  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 479
Target Start/End: Complemental strand, 5504196 - 5504093
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagcccct 475  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||        |||| ||||||||||||| | ||||||||||    
T  5504196 ttggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaataaaaaaaatgaatattttgccccctatgttttagcccct 5504097  T
Q  476 ttgc 479  Q
    ||||    
T  5504096 ttgc 5504093  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 124587 - 124529
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  124587 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaat 124529  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 3597323 - 3597376
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccc 431  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  3597323 ggctaaactacagttttggccccctaagtttactaatgttgcgattttggcccc 3597376  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 5502918 - 5503018
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    ||||||||||||||||||||||  ||||||||| |||||||| ||||||||||||||||        |||| ||||||||||||| | |||| |||||||    
T  5502918 ggctaaactacagttttgaccct-taagtttgccaatgttgcaattttggccccctaataaaaaaaatgaatattttgccccctatgttttaaccccttt 5503016  T
Q  478 gc 479  Q
    ||    
T  5503017 gc 5503018  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 3598982 - 3598924
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||||||||||||  ||||||| ||| | |||||||||||||||||||||||    
T  3598982 ttggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggcccccta 3598924  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 121349 - 121450
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    |||||||||||||||||||| | |||| ||||| |||||||| |||||| |||||||||        |||| |||||||||||||   ||||||||||||    
T  121349 ggctaaactacagttttgacactctaaatttgccaatgttgcaattttgaccccctaataaaaaaaatgaatattttgccccctatattttagccccttt 121448  T
Q  478 gc 479  Q
    ||    
T  121449 gc 121450  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 436
Target Start/End: Original strand, 14189663 - 14189722
Alignment:
Q  377 tggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    |||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  14189663 tggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 14189722  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 14190545 - 14190487
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaat 436  Q
    ||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||||    
T  14190545 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 14190487  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 17414542 - 17414600
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||||| |||||||||||| |||| |||   |||| ||||||||||||||||||    
T  17414542 ttggctaaactgcagttttgaccctctaacttttacaatggtgcgattttggcccccta 17414600  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 430
Target Start/End: Complemental strand, 17415749 - 17415695
Alignment:
Q  376 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccc 430  Q
    ||||||||||| ||||||||||||||||| |||   |||| ||||||||||||||    
T  17415749 ttggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccc 17415695  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 8061856 - 8061912
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||| ||||||||| |||   |||| ||||||||||||||||||    
T  8061856 ggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 8061912  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 13882655 - 13882756
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggccccctaatnnnnnnnntgaaaattttgccccctaagatttagccccttt 477  Q
    |||||||||||| |||||| | ||||||||||| |||||||  |||||| |||||||||        |||| ||||||||||||| | ||||||||||||    
T  13882655 ggctaaactacaattttgatctcctaagtttgccaatgttgtaattttgaccccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 13882754  T
Q  478 gc 479  Q
    ||    
T  13882755 gc 13882756  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 13883926 - 13883878
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttg 426  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  13883926 ggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttg 13883878  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 38612219 - 38612275
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||||||||||||||||||||||    
T  38612219 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38612275  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 38613475 - 38613419
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| ||||||||||||||||| |||   |||||||||||||||||||||||    
T  38613475 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38613419  T

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Target: scaffold1875 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 756 - 812
Alignment:
Q  378 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttggcccccta 434  Q
    ||||||||| || |||| ||||| |||||||   |||||||||||||||||||||||    
T  756 ggctaaactgcacttttcaccccttaagtttcgaaatgttgcgattttggcccccta 812  T

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