View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_13 (Length: 455)
Name: NF16511_low_13
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 27205869 - 27206239
Alignment:
| Q |
12 |
aatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaaggtggtagagtca |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27205869 |
aatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggcggtgcaactgcacttgatgtcaattatttcaaaggtggtagagtca |
27205968 |
T |
|
| Q |
112 |
ttaactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattattttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27205969 |
ttaactctttgaatatgcaatttgattggtttaagaagcttaaaccctcatcgtgtaaaactaaagaaggttttgtcctaactccctgcatactattttt |
27206068 |
T |
|
| Q |
212 |
gtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagcttcttcaaaaaattgttgtttgta |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27206069 |
gtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagcttcttcaaaaaattgttgtttgta |
27206168 |
T |
|
| Q |
312 |
gtgggagagattggtagaaataacgttttattcgatctttctaaaactattacagaattgcgagagttggt |
382 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
27206169 |
gtgggagagattggtagaaatgacgttttattcgatctttctaaaactattacagaactgcgagagatggt |
27206239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 13003795 - 13003415
Alignment:
| Q |
9 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaagg---tggta |
105 |
Q |
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|||||||||||||||| | ||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||| | || | || |
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| T |
13003795 |
aagaatatcaccaaaatcccagatgatataaaaaagggagttaatttcgcttatgccggttcaactgcacttgatgtcaaatattttagtggcattagtg |
13003696 |
T |
|
| Q |
106 |
gagtcatt---------aactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactcc |
196 |
Q |
| |
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|||||| | | || || || ||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||| ||| |
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| T |
13003695 |
gagtcagtgcaccaaaggaatcattagatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatcc |
13003596 |
T |
|
| Q |
197 |
ctgcatattatttttgtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagcttcttcaaa |
296 |
Q |
| |
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||||| |||||||||| ||| |||||| |||| || | || |||||||||||||| |||||||| || |||||||||||||||||| |||||||||||| |
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| T |
13003595 |
ttgcatgttatttttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttttatgagttcacagaatgtgacagcttcttcaaa |
13003496 |
T |
|
| Q |
297 |
aaattgttgtttgtagtgggagagattggtagaaataacgttttattcgatctttctaaaactattacagaattgcgagag |
377 |
Q |
| |
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|||| |||||| ||||||||||||||||| ||||| | |||| | |||||||||||||||||| |||| | |||||| |
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|
| T |
13003495 |
aaatcattgtttatagtgggagagattggtggaaatgatattttttatcatctttctaaaactattaaagaactacgagag |
13003415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 127 - 377
Target Start/End: Original strand, 31251921 - 31252171
Alignment:
| Q |
127 |
tgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattatttttgtttgaaataaattg |
226 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||| ||| | ||| |||||||||| ||| |||||| | |
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| T |
31251921 |
tgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagtaaagaaggttttgtcctaaatccttacatgttatttttgtgtgatataaatgg |
31252020 |
T |
|
| Q |
227 |
tttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagcttcttcaaaaaattgttgtttgtagtgggagagattggt |
326 |
Q |
| |
|
||| || | || |||||||||||||| |||||||| || |||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||| |
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|
| T |
31252021 |
tttatcatctatatgactaacaaaacttttgtttttttatgagttcacagaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggt |
31252120 |
T |
|
| Q |
327 |
agaaataacgttttattcgatctttctaaaactattacagaattgcgagag |
377 |
Q |
| |
|
||||| | |||| | ||||||||||||||||||||||| | |||||| |
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|
| T |
31252121 |
ggaaatgatattttttatcatctttctaaaactattacagaactacgagag |
31252171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 31094595 - 31094209
Alignment:
| Q |
9 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaaggtggtagag |
108 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||| || | ||||||| ||| || ||| |
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|
| T |
31094595 |
aagaatatcaccaaaagccaaggtgatgtaaaaaagggagttaatttcgcttatgccggttcaactgcacttgacatcgaatatttcagtggtagtggag |
31094496 |
T |
|
| Q |
109 |
tcatta---------------actctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaac |
193 |
Q |
| |
|
|| || |||| || | | ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
31094495 |
tctctacaccacagaaagataactcattaattgtgcaatttgattggtttaagaagctaaaacccttattgtgtaaaaacaaagaaggttttgtcctaac |
31094396 |
T |
|
| Q |
194 |
tccctgcatattatttttgtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgtt---gtgagttcacagaatgtgatagcttc |
290 |
Q |
| |
|
||| ||| | |||||||||| ||| |||||| ||| || | | |||||||||||||| ||| |||| || |||||||||||||||||||||||||| |
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|
| T |
31094395 |
tccttgcttgttatttttgtgtgatataaatgatttatcatcaatatgactaacaaaactttttttttcttcttgtgagttcacagaatgtgatagcttc |
31094296 |
T |
|
| Q |
291 |
ttcaaaaaattgttgtttgtagtgggagagattggtagaaataacgttttattcgatctttctaaaactattacagaattgcgagag |
377 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| ||||| | |||| | | |||||| ||||||||||||||| ||| |||| |
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|
| T |
31094295 |
ttcaaaaaatcgttgtttatagtgggagagattggtggaaatgatattttttaccatcttttcaaaactattacagaactgcaagag |
31094209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 27206427 - 27206508
Alignment:
| Q |
374 |
agagttggtggtttcagggaaattttcaatagggtgtactgctcacttattgtcaaataaaattagtcagaagaaagaagac |
455 |
Q |
| |
|
|||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
27206427 |
agagttggtggttttagggaacttcccaataggatgtactgctcacttattgtcaaataagattagtcagaagaaagaagac |
27206508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 31251791 - 31251876
Alignment:
| Q |
9 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattattt |
94 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||||||||||||| || |||| ||| ||||||||||||||||||| ||||| |
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| T |
31251791 |
aagaatatcaccaaaatcccagatgatataaaaaagggagttaatttcgcctatgccggttcaactgcacttgatgtcaaatattt |
31251876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 27228710 - 27228810
Alignment:
| Q |
113 |
taactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattatttttg |
212 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||||| | ||||| || |||||||||| | |||||||||||||| ||||| | ||| ||||||||||| |
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|
| T |
27228710 |
taactcattaaatgtgcaatttgaatggtttaagaatataaaaccatcattgtgtaaaagtgaagaaggttttgtcataactacttgcgtattatttttg |
27228809 |
T |
|
| Q |
213 |
t |
213 |
Q |
| |
|
| |
|
|
| T |
27228810 |
t |
27228810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 376
Target Start/End: Original strand, 16162788 - 16162891
Alignment:
| Q |
273 |
acagaatgtgatagcttcttcaaaaaattgttgtttgtagtgggagagattggtagaaataacgttttattcgatctttctaaaactattacagaattgc |
372 |
Q |
| |
|
||||| |||||||||||||||||| || || ||| |||||||||| |||||| ||||| | ||||| || || |||||||||||||||||||| ||| |
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|
| T |
16162788 |
acagagtgtgatagcttcttcaaacgatcattatttatagtgggagaaattggtggaaatgatgtttttttacatatttctaaaactattacagaactgc |
16162887 |
T |
|
| Q |
373 |
gaga |
376 |
Q |
| |
|
|||| |
|
|
| T |
16162888 |
gaga |
16162891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 31093979 - 31093905
Alignment:
| Q |
381 |
gtggtttcagggaaattttcaatagggtgtactgctcacttattgtcaaataaaattagtcagaagaaagaagac |
455 |
Q |
| |
|
||||||||||| || ||| |||||||||||| | || || |||||||||| || ||||||||||||||||||||| |
|
|
| T |
31093979 |
gtggtttcaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagtcagaagaaagaagac |
31093905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 13003179 - 13003105
Alignment:
| Q |
381 |
gtggtttcagggaaattttcaatagggtgtactgctcacttattgtcaaataaaattagtcagaagaaagaagac |
455 |
Q |
| |
|
|||||| ||||||| ||| |||| ||||||| | || || |||||||||| || ||||||||||||||||||||| |
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|
| T |
13003179 |
gtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaagattagtcagaagaaagaagac |
13003105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 455
Target Start/End: Original strand, 31252407 - 31252481
Alignment:
| Q |
381 |
gtggtttcagggaaattttcaatagggtgtactgctcacttattgtcaaataaaattagtcagaagaaagaagac |
455 |
Q |
| |
|
|||||| ||||||| ||| |||| ||||||| | || || |||||||||| || ||||||||||||||||||||| |
|
|
| T |
31252407 |
gtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaagattagtcagaagaaagaagac |
31252481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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