View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_15 (Length: 428)
Name: NF16511_low_15
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 33633038 - 33632645
Alignment:
| Q |
19 |
gcacacagacactaccttgttcagacatagtatgataattgcgatgctactttttctttttggcagattcaaaagtttgctatgaggtttccatcaatct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33633038 |
gcacacagacactaccttgttcagacatagtatgataattgtgatgctactttttcttttttgcagattcaaaagtttgctatgaggtttccatcaatct |
33632939 |
T |
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| Q |
119 |
atgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagtaataaatcacaactaaaaactatagaaccaggggttgcaatttcttc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33632938 |
atgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagtaataaatcacaactaaaaactatagaacaaggggttgcaatttcttc |
33632839 |
T |
|
| Q |
219 |
acttataaaaccatagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632838 |
acttataaaaccatagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattga |
33632739 |
T |
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| Q |
319 |
ctttggttcagaaatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtcattggttagatttt |
412 |
Q |
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| T |
33632738 |
ctttggttcagaaatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtaattggttagatttt |
33632645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 412
Target Start/End: Original strand, 29192916 - 29193301
Alignment:
| Q |
17 |
tcgcacacagacactaccttgttcagacatagtatgataattgcgatgctactttttctttttggcagattcaaaagtttgctatgaggtttccatcaat |
116 |
Q |
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||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29192916 |
tcgcacacagacactgccttattcagacatattatgataattgtgatgctactttt-ctttttggcagattcaaaagtttgctatgaggtttccatcaat |
29193014 |
T |
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| Q |
117 |
ctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagtaa--taaatcacaactaaaaactatagaaccaggggttgcaattt |
214 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| ||||||| || |
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| T |
29193015 |
ctatgaaacacaatcattcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaactaaaa----tagaaccagcggttgcacttg |
29193110 |
T |
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| Q |
215 |
cttcacttataaaaccatagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaata |
314 |
Q |
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| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |
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| T |
29193111 |
c---acttataaaaccatagtctttgcttgttgattttttctgattgtgttccttcccaggagatcctgaaagatgacaaggagccggaacctttaaata |
29193207 |
T |
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| Q |
315 |
ttgactttggttcagaaatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtcattggttagatttt |
412 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29193208 |
ttgactttggttcagaaatttcgtctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaag----ttgtcattggttagatttt |
29193301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 91 - 254
Target Start/End: Original strand, 29182893 - 29183063
Alignment:
| Q |
91 |
aagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagt--aataaatcacaactaaa |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||| |
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| T |
29182893 |
aagtttgctatgaggtttccatcaatctatgaaacacaatcattcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaactaaa |
29182992 |
T |
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| Q |
189 |
aactatagaaccaggggttgcaatttc---------ttcacttataaaaccatagtatttgcttgttgatttttt |
254 |
Q |
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|||||||||| ||||||| || | | |||||||||||||||||| |||||||||||||||||| |
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| T |
29182993 |
----atagaaccagcggttgcacttgcacttgcacttgcacttataaaaccatagtctttgcttgttgatttttt |
29183063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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