View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_19 (Length: 382)
Name: NF16511_low_19
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 170 - 366
Target Start/End: Original strand, 7133367 - 7133563
Alignment:
| Q |
170 |
tgtaagccagatgttacctattatatagtgggaaaatttcattttgagttccagctatacggtgatttaatatgttaagtgagttagttccctatttcca |
269 |
Q |
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| T |
7133367 |
tgtaagccagatgttacctattatatagcgggaaaatttcattttgagttccagctatacggtgacttaatatgttaagtgagttagttccctatttcca |
7133466 |
T |
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| Q |
270 |
gtactatagtgttgtgctactggttgtatttactgctgcctttgacagaagatgttttcacatgatcaaggtgggttgagaattgagatgcattctt |
366 |
Q |
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| T |
7133467 |
gtactatagtgttgtgctattgattgtatttactgctgcctttgacagaagatgttttcacatgatcaaggtgggttgagaattgagatgcattctt |
7133563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 222 - 350
Target Start/End: Original strand, 7128094 - 7128222
Alignment:
| Q |
222 |
agctatacggtgatttaatatgttaagtgagttagttccctatttccagtactatagtgttgtgctactggttgtatttactgctgcctttgacagaaga |
321 |
Q |
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| T |
7128094 |
agctataaggtgaattaatatgttaagtgagctagttccctatttccaatactatagtgttgtgctactggttgtatttattgctgcctttgaaagaaga |
7128193 |
T |
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| Q |
322 |
tgttttcacatgatcaaggtgggttgaga |
350 |
Q |
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| T |
7128194 |
tgttttcacttcatcaaggtgggttgaga |
7128222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 7133214 - 7133287
Alignment:
| Q |
17 |
aaatttcactaatccaaaaactactccaagcgttagcagttaaaccatcaccaatagaccaataagatgaaaga |
90 |
Q |
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| T |
7133214 |
aaatttcactactccaaaaactactccaagcgttagcatttaaaccatcaccaatagacaaataagatgaaaga |
7133287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 7127960 - 7128022
Alignment:
| Q |
28 |
atccaaaaactactccaagcgttagcagttaaaccatcaccaatagaccaataagatgaaaga |
90 |
Q |
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|||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7127960 |
atccaacaaccacttcaagagttagcagttaaaccatcaccaatagaccaataagatgtaaga |
7128022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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