View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_2 (Length: 616)
Name: NF16511_low_2
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 48 - 600
Target Start/End: Complemental strand, 38643728 - 38643184
Alignment:
| Q |
48 |
tgaaactagagtatgcatgtcataagaagtaattcaatgcaaaaatatgtactataggttatgattatatcatgatatatgttccaaaaaaggtctaaac |
147 |
Q |
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| T |
38643728 |
tgaaactagagtatgcatgtcataagaagtaattcaatgcaaaaatatgtactataggttatgaatatatcatgatatatgttccaaaaaaggtctaaac |
38643629 |
T |
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| Q |
148 |
atnnnnnnnnnnnnnnnntcaaagacattgaaaataaaatcacttactgaggaaatctcccaagctgaattgtttcttggcaacccacttctgataatta |
247 |
Q |
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| T |
38643628 |
ataaaaaaaa--------tcaaagacattgaaaataaaatcacttactgaggaaatctcccaagctgaattgtttcttggcaacccacttctgataatta |
38643537 |
T |
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| Q |
248 |
acagttggcttttcaagattgtcaaaccagcctaaagaatctcccactgtgtaatttttgtaagctccaacagaacctaagaaacatgagagaaaaagac |
347 |
Q |
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| T |
38643536 |
acagttggcttttcaagattgtcaaaccagcctaaagaatctcccactgtgtaatttttgtaagctccaacagaacctaagaaacatgggagaaaaagac |
38643437 |
T |
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| Q |
348 |
aagaaagagttgagaatagaagaaaccatgatgagtttcttctatgttccattattcttggggtgagttgagtgaaatgtgaataatggcaactagcaga |
447 |
Q |
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| T |
38643436 |
aagaaagagttgagaatagaagaaaccatgatgagtttcttctatgttccattattcttggggtgagttgagtgaaatgtgaataatggcaactagcaga |
38643337 |
T |
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| Q |
448 |
ggcaaactaacaactaagtactagcttttatgacaggctcagtggatgagaatgtaggattcatatgctgccagctatggtaacatgtgatttatattta |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38643336 |
ggcaaactaacaactaagtactagcttttatgacaggctcagtggatgagaatgtaggattcatatgctgccagctatggtaacatgtgatttatattta |
38643237 |
T |
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| Q |
548 |
agaagccttgtgtttctgttgaattactaaaatactactactcactatttcat |
600 |
Q |
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| T |
38643236 |
agaagccttgtgtttttgttgaattactaaaatactactactcactatttcat |
38643184 |
T |
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