View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_22 (Length: 374)
Name: NF16511_low_22
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 35341321 - 35341675
Alignment:
| Q |
10 |
agtagcaaaggagatatgacaaaatgacataatcatcattgggcgtgactgataccctttatttactaggctaacaacaaccgaacaatttacttcaaca |
109 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35341321 |
agtaacaaaagagatatgacaaaatgacataatcatcattgggcgtgactgataccctttatttactaggctaacaacaaccgaacaatttacttcaaca |
35341420 |
T |
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| Q |
110 |
agaaggaaatgtataggtacgcttcttgcgagtttcaagcaaaggtcgagaccctagagctcagtaaagatgacattagaggcacgggtggatctatcat |
209 |
Q |
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| T |
35341421 |
agaaggaaatgtataggtacgcttcttgcgagtttcaagcaaaggtcaagaccctagagctcagtaaagatgacattagaggcacgggtggatctatcat |
35341520 |
T |
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| Q |
210 |
aaaccttggtgt-------ggctaaagccacactagattttttccaaaaataaatttacatacgaaggatgtctataaaaatgaaatgttagaggaagtt |
302 |
Q |
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| T |
35341521 |
aaaccttggtgtggctttaggctaaagccacgctagattttttccaaaaataaatttacatacgaaggatgtctataaaaatgaaatgttagaggaagtt |
35341620 |
T |
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| Q |
303 |
gacatcccattttgttctaattagcgtcacaaataaacttcggttaagaaaactg |
357 |
Q |
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| T |
35341621 |
gacatcccattttgttctaattagcgtcacaaataaacttcggttaagaaaactg |
35341675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 5034870 - 5034808
Alignment:
| Q |
62 |
taccctttatttactaggctaacaacaaccgaacaatttacttcaacaagaaggaaatgtatag |
125 |
Q |
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| T |
5034870 |
tacccttt-tttactaggctaacaataaccgatgagtctacttcaacaagaaggaaatgaatag |
5034808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 4374041 - 4374085
Alignment:
| Q |
256 |
atttacatacgaaggatgtctataaaaatgaaatgttagaggaag |
300 |
Q |
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| T |
4374041 |
atttacatatgaaggatgtctataaaaatgaaatgttagaagaag |
4374085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 32104040 - 32103994
Alignment:
| Q |
256 |
atttacatacgaaggatgtctataaaaatgaaatgttagaggaagtt |
302 |
Q |
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| T |
32104040 |
atttacatatgaaggatgtctataaaaatgaaatgtttgaagaagtt |
32103994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 7116497 - 7116544
Alignment:
| Q |
259 |
tacatacgaaggatgtctataaaaatgaaatgttagaggaagttgaca |
306 |
Q |
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||||||||||| | | ||||||||||||||||||||||||||||||| |
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| T |
7116497 |
tacatacgaagcttttttataaaaatgaaatgttagaggaagttgaca |
7116544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 24912260 - 24912212
Alignment:
| Q |
257 |
tttacatacgaaggatgtctataaaaatgaaatgttagaggaagttgac |
305 |
Q |
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|||||||| ||||||||||||||||||| || |||||||| || ||||| |
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| T |
24912260 |
tttacatatgaaggatgtctataaaaataaagtgttagagaaacttgac |
24912212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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