View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_23 (Length: 369)
Name: NF16511_low_23
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 353
Target Start/End: Complemental strand, 51541782 - 51541458
Alignment:
| Q |
29 |
aaatgaaacatggttgtccccaagacaatcaggaggataatttgttgaatgatacatcaattgaagatgatttgattctctttgagtagattgcattaat |
128 |
Q |
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| T |
51541782 |
aaatgaaacatggttgtccccaagacaatcaggaggataatttgttgaatgatacatcaattgaagatgatttgattctctttgagtagattgcattaat |
51541683 |
T |
|
| Q |
129 |
gtctgtagcagttaacatttgttgtggaagagttattgcacagaacctggattttaatgtaagttatcaaaatacttttgtgttttgcgttcaagtaaat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51541682 |
gtctgtagcagttaacatttgttgtggaagagttattgcacagaacctggattttaatgtaagttatcaaaatacttttgtgttttgcgttcaagtaaat |
51541583 |
T |
|
| Q |
229 |
gtcttcatattttaatgcagtttagaaatccatgcaacacgtcggttacaggcttacaattgacggagtgtaactaccattacacattgtaaaaacaaat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51541582 |
gtcttcatattttaatgcagtttagaaatccatgcaacacgtcggttacaggctgacaattgacggagtgtaactaccattacacattgtaaaaacaaat |
51541483 |
T |
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| Q |
329 |
ttgtgcactctaattagtaataact |
353 |
Q |
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||||||||||||||||||||||||| |
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| T |
51541482 |
ttgtgcactctaattagtaataact |
51541458 |
T |
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