View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_25 (Length: 359)
Name: NF16511_low_25
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 43207428 - 43207077
Alignment:
| Q |
8 |
aagcaaaggcttagcactaatcagctttgaaacgggattttatgctcttacaaaaagctgaagcatagatatatcatatgttatatataagcctccatta |
107 |
Q |
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| T |
43207428 |
aagcaaaggcttagtactaatcagctttgaaacgggattttatgctcttacaaaaagctgaagcatagatatatcatatgttatatataagcctgcatta |
43207329 |
T |
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| Q |
108 |
acttgaatctgcagctctgtttggcacgtccggtttccttgtaaactcccacgacgttagtgtcagaatttcaacttatctagttaattaattaacacca |
207 |
Q |
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| T |
43207328 |
acttgaatctgcagctctgtttggcacgtccggtttccttgtaaactcccacgacgtaagtgtcagaatttcaacttatctggttaattaattaacacca |
43207229 |
T |
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| Q |
208 |
cgtttaaaaaattcaaacgggtagagtggacatggtttgcattaagcagaatcaattaagttttaaaccaaaccaaacacttcccaaactctaatatcac |
307 |
Q |
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| T |
43207228 |
agtttaaaaaattcaaacgggtagagtggacatggtttgcattaagcagaatcaattaagttttaaaccaaaccaaacacttcccaaactctaatatcac |
43207129 |
T |
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| Q |
308 |
catcaagacttccactaaacgacgtaacaacgtcatcatcatcttcacctcc |
359 |
Q |
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| T |
43207128 |
catcaagacttccactaaacaacgtaacaacctcatcatcatcttcacctcc |
43207077 |
T |
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