View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_29 (Length: 322)
Name: NF16511_low_29
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 45233602 - 45233891
Alignment:
| Q |
15 |
tgaattcaacttggatgcaaatttcttgacagaatccaatgagttgagatctaactccatgatatcaagtttagcagagggaatgtccttgactattgta |
114 |
Q |
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| T |
45233602 |
tgaattcaacttggatgcaaatttcttgacagaatccaatgagttgagatctaactccatgatatcaagtttagcagagggaatgtccttgactattata |
45233701 |
T |
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| Q |
115 |
tctttgacatctttagcggcaaccatatttctcatacccataatcacatgaacactgtgcaaagcaaggacacgagtagtctcagcgtcaatgccgtttg |
214 |
Q |
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| T |
45233702 |
tctttgacatctttagcggcaactatatttctcatacccataatcacatgaacactgtgcaaaacaaggacacgagtagtctcagcgtcaatgccgtttg |
45233801 |
T |
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| Q |
215 |
atgctcctactaccacaatgtccatatatcacattaaaaatactcacacatcatgagaattattcattaagaattcaatgtagcggtagc |
304 |
Q |
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| T |
45233802 |
atgctcctactaccacaatgtccatatatcacattaaaaatactcacacatcatgagaattattcattaagaattcaatgtagcggtagc |
45233891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 45206492 - 45206706
Alignment:
| Q |
28 |
gatgcaaatttcttgacagaatccaatgagttgagatctaactccatgatatcaagtttagcagagggaatgtccttgactattgtatctttgacatctt |
127 |
Q |
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| T |
45206492 |
gatgcaaatttcttgacagagtccaatgagctgagatctaactccatggcatcaagtttggctgagggaatgtccttgagtattgtatctttgacatctt |
45206591 |
T |
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| Q |
128 |
tagcggcaaccatatttctcatacccataatcacatgaacactgtgcaaagcaaggacacgagtagtctcagcgtcaatgccgtttgatgctcctactac |
227 |
Q |
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| T |
45206592 |
tagcagcaaccaagtttctcacacccataatcacatgcacaccgcgcaaagcaaggacacgagcagtctcagcgccaatgccgctggatgctcctgttac |
45206691 |
T |
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| Q |
228 |
cacaatgtccatata |
242 |
Q |
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| T |
45206692 |
cacaatgaccatata |
45206706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 45232372 - 45232543
Alignment:
| Q |
27 |
ggatgcaaatttcttgacagaatccaatgagttgagatctaactccatgatatcaagtttagcagagggaatgtccttgactattgtatctttgacatct |
126 |
Q |
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| T |
45232372 |
ggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacatcaattttagctgagggaatctccttaagtattgcttctttgatatca |
45232471 |
T |
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| Q |
127 |
ttagcggcaaccatatttctcatacccataatcacatgaacactgtgcaaagcaaggacacgagtagtctca |
198 |
Q |
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| T |
45232472 |
ttagcagcaaccttatttctaacagccacaatcacatggacaccacgcaaagcaagaacacgcatagtctca |
45232543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 45248555 - 45248725
Alignment:
| Q |
28 |
gatgcaaatttcttgacagaatccaatgagttgagatctaactccatgatatcaagtttagcagagggaatgtccttgactattgtatctttgacatctt |
127 |
Q |
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||||||||||| |||||||| |||||||| |||||||||||||||||| ||||| |||||| |||||||| ||||| | ||||| || |||| ||| | |
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| T |
45248555 |
gatgcaaattttttgacagattccaatgaactgagatctaactccatgacatcaactttagccgagggaatctccttaagtattgcttcattgatatcat |
45248654 |
T |
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| Q |
128 |
tagcggcaaccatatttctcatacccataatcacatgaacactgtgcaaagcaaggacacgagtagtctca |
198 |
Q |
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| T |
45248655 |
tagcagcaaccttatttcgaacagccataatcacatggacaccacgcaaagcaagaacacgcgtagtctca |
45248725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 45213609 - 45213781
Alignment:
| Q |
27 |
ggatgcaaatttcttgacagaatccaatgagttgagatctaactccatgatatcaagtttagcagagggaatgtccttgactattgtatctttgacatct |
126 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||| ||||| ||| || |||||||| || || | ||||| ||| || || |
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| T |
45213609 |
ggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacatcaatttttgctgagggaatctctttaagtattgcttctctggtatta |
45213708 |
T |
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| Q |
127 |
ttagcggcaaccatatttctcatacccataatcacatgaacactgtgcaaagcaaggacacgagtagtctcag |
199 |
Q |
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| T |
45213709 |
ttagcattaaccttatttctaacagccataatcacatggacaccatgtaaagcaagaacacgcgtagtctcag |
45213781 |
T |
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