View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16511_low_3 (Length: 598)

Name: NF16511_low_3
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16511_low_3
NF16511_low_3
[»] chr1 (6 HSPs)
chr1 (19-510)||(29452533-29453024)
chr1 (137-504)||(29467013-29467380)
chr1 (157-510)||(29423828-29424181)
chr1 (159-506)||(29442545-29442892)
chr1 (24-88)||(29467432-29467495)
chr1 (30-87)||(29442970-29443027)
[»] chr2 (42 HSPs)
chr2 (157-490)||(14550934-14551266)
chr2 (353-504)||(10336621-10336772)
chr2 (311-438)||(8572755-8572882)
chr2 (337-457)||(10372676-10372796)
chr2 (330-435)||(9292715-9292820)
chr2 (124-231)||(12005620-12005727)
chr2 (342-457)||(9321790-9321905)
chr2 (337-438)||(9316816-9316920)
chr2 (354-438)||(9283428-9283512)
chr2 (335-435)||(10353937-10354037)
chr2 (124-184)||(12012095-12012155)
chr2 (362-457)||(9329418-9329513)
chr2 (363-438)||(12011847-12011922)
chr2 (360-457)||(10348620-10348717)
chr2 (382-457)||(9060333-9060408)
chr2 (30-88)||(9357613-9357671)
chr2 (137-231)||(12018384-12018478)
chr2 (353-458)||(9275333-9275438)
chr2 (362-427)||(9357935-9358000)
chr2 (363-436)||(12018170-12018243)
chr2 (382-438)||(9365434-9365490)
chr2 (139-231)||(11986983-11987075)
chr2 (353-436)||(7114901-7114984)
chr2 (363-469)||(7612716-7612822)
chr2 (30-88)||(9292358-9292416)
chr2 (352-438)||(12005419-12005505)
chr2 (30-87)||(9283833-9283890)
chr2 (157-191)||(8579035-8579069)
chr2 (30-88)||(9060777-9060835)
chr2 (30-76)||(9321406-9321452)
chr2 (368-438)||(11986779-11986849)
chr2 (30-87)||(8573142-8573199)
chr2 (157-190)||(9365209-9365242)
chr2 (363-470)||(8578747-8578854)
chr2 (370-469)||(17565337-17565436)
chr2 (121-183)||(8573046-8573108)
chr2 (30-88)||(10336274-10336332)
chr2 (125-183)||(10348313-10348371)
chr2 (30-87)||(7115282-7115339)
chr2 (126-191)||(10336367-10336432)
chr2 (158-190)||(7612511-7612543)
chr2 (33-89)||(9274945-9275001)
[»] chr8 (2 HSPs)
chr8 (287-438)||(41965976-41966130)
chr8 (30-184)||(41966263-41966423)
[»] scaffold0667 (3 HSPs)
scaffold0667 (334-457)||(5250-5373)
scaffold0667 (30-88)||(4913-4971)
scaffold0667 (121-183)||(5004-5066)
[»] chr3 (2 HSPs)
chr3 (314-494)||(37463293-37463473)
chr3 (30-88)||(37462928-37462986)
[»] chr4 (3 HSPs)
chr4 (335-438)||(26575671-26575774)
chr4 (31-88)||(26575304-26575361)
chr4 (156-187)||(561786-561817)
[»] chr5 (1 HSPs)
chr5 (368-448)||(36225575-36225655)


Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Complemental strand, 29453024 - 29452533
Alignment:
Q  19 gatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaacacatgagagaaagtggacgttgccagaacg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29453024 gatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaacacatgagagaaagtggacgttgccagaacg 29452925  T
Q  119 aggaggaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaagg 218  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452924 aggaggaggaatagaaatagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaagg 29452825  T
Q  219 ccgttacatgaactgaacatagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggt 318  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452824 ccgttacatgaactgaacagagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggt 29452725  T
Q  319 agaaaacagagttgtgtcgaagaattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattt 418  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452724 agaaaacagagttgtgtcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattt 29452625  T
Q  419 tgaggttgaacggaatcggatgagggattgtaccggtaacagagagaggataccggtgagtatctcaggcggaagatccgccattggagctt 510  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  29452624 tgaggttgaacggaatcggaggagggattgtaccggtaacagagagaggataccggtaagtatctccggcggaagatccgccattggagctt 29452533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 137 - 504
Target Start/End: Complemental strand, 29467380 - 29467013
Alignment:
Q  137 agggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactgaac 236  Q
    |||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| ||||    
T  29467380 agggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattgatggaaatgcagagaaggccgttacatgaaccgaac 29467281  T
Q  237 atagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgtgtc 336  Q
    | |||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  29467280 agagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgtc 29467181  T
Q  337 gaagaattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcg 436  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29467180 gaaggattaagaaacgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaacggaatcg 29467081  T
Q  437 gatgagggattgtaccggtaacagagagaggataccggtgagtatctcaggcggaagatccgccattg 504  Q
    || |||||||||||||||||||||||||| ||| ||||||| ||| || || |||||||| |||||||    
T  29467080 gaggagggattgtaccggtaacagagagatgattccggtgattatttccggaggaagatcagccattg 29467013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 157 - 510
Target Start/End: Original strand, 29423828 - 29424181
Alignment:
Q  157 gatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactgaacatagagatgttgttgttggg 256  Q
    ||||||||| |||| |||||||||||||||||||| |  ||| || |   | | ||||||||||||||||||| | || || |||||||  ||||||||     
T  29423828 gatgtttacagatggtagggttccagaaagcgatttcaccatcggagaagaggcagagaaggccgttacatgatccgaccagagagatgaagttgttgga 29423927  T
Q  257 gagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgtgtcgaagaattaaggaacgattg 356  Q
    |  |||||||||| |||||||||||| |  ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  29423928 gcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcgttgatttggtagaaatcagagttgtgtcgaaggattaaggaacgattg 29424027  T
Q  357 agggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtaccggta 456  Q
    | |||||| ||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29424028 aaggaattatggaggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggta 29424127  T
Q  457 acagagagaggataccggtgagtatctcaggcggaagatccgccattggagctt 510  Q
    ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  29424128 acagagagaggattccggtgagtatctccggcggaagatccgtcattggagctt 29424181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 159 - 506
Target Start/End: Complemental strand, 29442892 - 29442545
Alignment:
Q  159 tgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactgaacatagagatgttgttgttgggga 258  Q
    |||||||||||||||||||||||||||||||||||  |||||| || |||| |||||||||||||||||||||  |  | ||| |||  |||| ||||      
T  29442892 tgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgcggttgatgggac 29442793  T
Q  259 gtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgtgtcgaagaattaaggaacgattgag 358  Q
     | |||||||||  |||||||||| || ||||||||||||||||||||| | ||||||||||||| || ||||||||||||| |||||||||||||||||    
T  29442792 ctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcttcgatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgag 29442693  T
Q  359 ggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtaccggtaac 458  Q
    | |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||| |||||||||| ||||||||    
T  29442692 gaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaac 29442593  T
Q  459 agagagaggataccggtgagtatctcaggcggaagatccgccattgga 506  Q
    ||||||||||| ||||| |||||||| |||||||||||| ||||||||    
T  29442592 agagagaggattccggtaagtatctccggcggaagatccaccattgga 29442545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 29467495 - 29467432
Alignment:
Q  24 acgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 88  Q
    |||| ||||||||||||||| |||||||||||  || |||| ||||||||||| |||||||||||    
T  29467495 acgaaacaagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaac 29467432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 29443027 - 29442970
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaa 87  Q
    ||||||||||||| |||||||||||||  | | || ||||||||||| ||||||||||    
T  29443027 caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 6e-91; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 157 - 490
Target Start/End: Original strand, 14550934 - 14551266
Alignment:
Q  157 gatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactgaacatagagatgttgttgttggg 256  Q
    ||||||||||||||||||||||||| ||||| ||| || ||||||     ||| ||||||| ||||||||||||| || || |||||||  |||||||      
T  14550934 gatgtttacggatgttagggttccataaagcaatttcgccattggaaaagatgtagagaagaccgttacatgaaccgagcagagagatgaagttgttgaa 14551033  T
Q  257 gagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgtgtcgaagaattaaggaacgattg 356  Q
    |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   || ||||||||||| |||||||||| ||||    
T  14551034 gccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagagattggacttgtgtcgaaggattaaggaacaattg 14551133  T
Q  357 agggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtaccggta 456  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||  |||||    
T  14551134 agggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaattggaggagggattgtggcggta 14551232  T
Q  457 acagagagaggataccggtgagtatctcaggcgg 490  Q
    ||||||||||||| | |||||||||||| |||||    
T  14551233 acagagagaggattctggtgagtatctccggcgg 14551266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 353 - 504
Target Start/End: Original strand, 10336621 - 10336772
Alignment:
Q  353 attgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtacc 452  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||||||||  || |||| ||||    
T  10336621 attgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttacc 10336720  T
Q  453 ggtaacagagagaggataccggtgagtatctcaggcggaagatccgccattg 504  Q
    |||||  | |||| |||  ||| ||| || || |||||||||||||||||||    
T  10336721 ggtaaacgggagaagatttcggagagaatttccggcggaagatccgccattg 10336772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 311 - 438
Target Start/End: Complemental strand, 8572882 - 8572755
Alignment:
Q  311 gatttggtagaaaacagagttgtgtcgaagaattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattga 410  Q
    ||||||||||| | |  ||||| ||||||  ||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||||||||||  |||| |    
T  8572882 gatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagattta 8572783  T
Q  411 agtgattttgaggttgaacggaatcgga 438  Q
    ||||||||||| ||||| ||||||||||    
T  8572782 agtgattttgaagttgatcggaatcgga 8572755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 337 - 457
Target Start/End: Original strand, 10372676 - 10372796
Alignment:
Q  337 gaagaattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcg 436  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||  |||| || ||||||||| ||||| ||||||||    
T  10372676 gaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcg 10372775  T
Q  437 gatgagggattgtaccggtaa 457  Q
    ||  || |||| |||||||||    
T  10372776 gagaagtgattttaccggtaa 10372796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 330 - 435
Target Start/End: Original strand, 9292715 - 9292820
Alignment:
Q  330 ttgtgtcgaagaattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaac 429  Q
    ||||||||||| |||||||| || ||||||||||||| ||||||||| ||  ||||| ||||||||||||||||||||| ||||||||||||  |||| |    
T  9292715 ttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatc 9292814  T
Q  430 ggaatc 435  Q
    ||||||    
T  9292815 ggaatc 9292820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 12005727 - 12005620
Alignment:
Q  124 gaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgtt 223  Q
    ||||||||| || |||||||||||| ||| || |||||||||||||||||||||||||||||| |||| || | |||| || |||| |||| ||||||||    
T  12005727 gaggaataggaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttcggctttggaggaaatgcagaggaggccgtt 12005628  T
Q  224 acatgaac 231  Q
    ||||||||    
T  12005627 acatgaac 12005620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 342 - 457
Target Start/End: Original strand, 9321790 - 9321905
Alignment:
Q  342 attaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatga 441  Q
    |||||||| ||| |||||||||||| ||| ||||| |||||||||| |||||||||||||| ||||| ||||||||| || ||||| |||||| |||  |    
T  9321790 attaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattggagaa 9321889  T
Q  442 gggattgtaccggtaa 457  Q
    | |||| |||||||||    
T  9321890 gtgattttaccggtaa 9321905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 438
Target Start/End: Original strand, 9316816 - 9316920
Alignment:
Q  337 gaagaattaaggaacgattgagggaatt---ttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaa 433  Q
    |||| |||||||| ||||||||||||||   || ||||||||| |||||||||||||||||||| ||||  |||| |||||||||||| ||||| |||||    
T  9316816 gaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaa 9316915  T
Q  434 tcgga 438  Q
    |||||    
T  9316916 tcgga 9316920  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 354 - 438
Target Start/End: Complemental strand, 9283512 - 9283428
Alignment:
Q  354 ttgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcgga 438  Q
    ||||||||| ||| ||||||||| |||||||| ||||||||||| ||||||||| |||||||||| || ||||| ||||||||||    
T  9283512 ttgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcgga 9283428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 335 - 435
Target Start/End: Original strand, 10353937 - 10354037
Alignment:
Q  335 tcgaagaattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaat 434  Q
    |||||||||||||||  ||||| ||||||||  ||||||||| |||||||| ||||  |||||||||||||||| || ||||||||| ||||| ||||||    
T  10353937 tcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaat 10354036  T
Q  435 c 435  Q
    |    
T  10354037 c 10354037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 12012155 - 12012095
Alignment:
Q  124 gaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccagaa 184  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  12012155 gaggaatagaaacagggagattagggataatctgatgtttacggatgttagggttccagaa 12012095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 362 - 457
Target Start/End: Original strand, 9329418 - 9329513
Alignment:
Q  362 attttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtaccggtaa 457  Q
    ||||| ||||||||| ||  |||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||||  || |||| |||||||||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaa 9329513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 363 - 438
Target Start/End: Complemental strand, 12011922 - 12011847
Alignment:
Q  363 ttttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcgga 438  Q
    |||| ||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgga 12011847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 360 - 457
Target Start/End: Original strand, 10348620 - 10348717
Alignment:
Q  360 gaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtaccggtaa 457  Q
    |||||||  |||||||| |||||||| ||| | |||||||||| ||||| |||||||||||||||||| ||||||||||  || |||| |||||||||    
T  10348620 gaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaa 10348717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 382 - 457
Target Start/End: Complemental strand, 9060408 - 9060333
Alignment:
Q  382 tgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtaccggtaa 457  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||  || ||||| ||||||||    
T  9060408 tgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaa 9060333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 9357613 - 9357671
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 88  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||    
T  9357613 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaac 9357671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 12018478 - 12018384
Alignment:
Q  137 agggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaac 231  Q
    |||||||| ||| ||| || ||||||||||||||| ||||||||||||||||||| ||   |||| || |||| |||| ||||||||||||||||    
T  12018478 agggagatgagggataatccgatgtttacggatgtaagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaac 12018384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 458
Target Start/End: Original strand, 9275333 - 9275438
Alignment:
Q  353 attgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtacc 452  Q
    |||||||||||||| ||| ||||| |||||||||||||| ||||| || |  |||| ||||||||||||| |||| ||||||| ||  || ||||||||     
T  9275333 attgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtact 9275432  T
Q  453 ggtaac 458  Q
    ||||||    
T  9275433 ggtaac 9275438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 9357935 - 9358000
Alignment:
Q  362 attttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttga 427  Q
    ||||| ||||||||| || |||||||||||||||||||||| ||||| |||||||||||| |||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttga 9358000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 436
Target Start/End: Complemental strand, 12018243 - 12018170
Alignment:
Q  363 ttttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcg 436  Q
    |||| ||| ||||| ||| ||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||    
T  12018243 tttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcg 12018170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 9365434 - 9365490
Alignment:
Q  382 tgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcgga 438  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  9365434 tgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcgga 9365490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 11987075 - 11986983
Alignment:
Q  139 ggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaac 231  Q
    |||||| ||| ||| || ||||||||||| ||||||||||||||||||||||| ||   |||| || |||| |||| ||||||||||||||||    
T  11987075 ggagatgagggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaac 11986983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 436
Target Start/End: Complemental strand, 7114984 - 7114901
Alignment:
Q  353 attgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcg 436  Q
    ||||| ||||||||  || ||||| |||||||| ||||| |||||||||| ||||| |||||||||||| ||||| ||||||||    
T  7114984 attgaaggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcg 7114901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 363 - 469
Target Start/End: Original strand, 7612716 - 7612822
Alignment:
Q  363 ttttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtaccggtaacagag 462  Q
    |||| ||||||||| ||  |||||||||| ||||| |||| ||||| ||| ||||| ||  |||| |||||||||| ||||| ||||||||||||  |||    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  463 agaggat 469  Q
    |||||||    
T  7612816 agaggat 7612822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 9292358 - 9292416
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 88  Q
    ||||||||||||||||||||||||||| || |||| |||||| |||| |||||||||||    
T  9292358 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 9292416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 352 - 438
Target Start/End: Complemental strand, 12005505 - 12005419
Alignment:
Q  352 gattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcgga 438  Q
    ||||||| |||||||  || ||||| ||| ||||||||||||||||||||| ||||| ||| |||| ||| ||||| ||||||||||    
T  12005505 gattgagagaattttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcgga 12005419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 9283890 - 9283833
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaa 87  Q
    |||||||||| |||||||||||||||| || |||| ||||||||||| ||||||||||    
T  9283890 caagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 9283833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 8579069 - 8579035
Alignment:
Q  157 gatgtttacggatgttagggttccagaaagcgatt 191  Q
    |||||||||||||||||||||||||||||||||||    
T  8579069 gatgtttacggatgttagggttccagaaagcgatt 8579035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 9060835 - 9060777
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 88  Q
    |||| |||||||||||||||||||||| || | || ||||||||||| |||||||||||    
T  9060835 caagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaac 9060777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 9321406 - 9321452
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaacc 76  Q
    ||||||||||||||||||||||||||| || |||| |||||||||||    
T  9321406 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaacc 9321452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 438
Target Start/End: Complemental strand, 11986849 - 11986779
Alignment:
Q  368 gaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcgga 438  Q
    ||||||||| ||| |||||||||||||||| |||| ||||| ||| |||| ||| ||||| ||||||||||    
T  11986849 gaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcgga 11986779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 8573199 - 8573142
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaa 87  Q
    |||||||||| |||||||||||||||| || ||||  |||||||||| ||||||||||    
T  8573199 caagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 9365209 - 9365242
Alignment:
Q  157 gatgtttacggatgttagggttccagaaagcgat 190  Q
    ||||||||||||||||||||||||||||||||||    
T  9365209 gatgtttacggatgttagggttccagaaagcgat 9365242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 470
Target Start/End: Complemental strand, 8578854 - 8578747
Alignment:
Q  363 ttttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtaccggtaacagag 462  Q
    |||| ||||| | ||||| ||||| |||| ||||| || | |||| |||||||||| ||  |||| ||||||||||  |||||||||||||||||  | |    
T  8578854 tttttgaggtaatgtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcggg 8578755  T
Q  463 agaggata 470  Q
    ||||||||    
T  8578754 agaggata 8578747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 469
Target Start/End: Complemental strand, 17565436 - 17565337
Alignment:
Q  370 ggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattgtaccggtaacagagagaggat 469  Q
    ||||||| ||| ||||||| || ||||| ||||   ||| ||||||||| || ||||| |||| ||||| |||||||||||| |||||  ||||||||||    
T  17565436 ggtgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggat 17565337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 8573108 - 8573046
Alignment:
Q  121 gaggaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccaga 183  Q
    |||||| ||||| ||||||||||  ||| ||| | |||||||||||| |||||||||||||||    
T  8573108 gaggagtaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccaga 8573046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 10336274 - 10336332
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 88  Q
    ||||||||||||||||||||||||||| ||  ||| | ||||||||| || ||||||||    
T  10336274 caagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaac 10336332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 10348313 - 10348371
Alignment:
Q  125 aggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccaga 183  Q
    |||||||| ||||||||||  ||| ||| | |||||||||||| |||||||||||||||    
T  10348313 aggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccaga 10348371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 7115339 - 7115282
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaa 87  Q
    |||||||||||||| |||||||||||  |  |||| ||||||||||| ||||||||||    
T  7115339 caagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaa 7115282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 10336367 - 10336432
Alignment:
Q  126 ggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgatt 191  Q
    ||||||| ||||||||||| ||| ||| || |||||||||||||| |||| || ||||| ||||||    
T  10336367 ggaataggaagagggagataagggataatccgatgtttacggatggtaggattacagaatgcgatt 10336432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 7612511 - 7612543
Alignment:
Q  158 atgtttacggatgttagggttccagaaagcgat 190  Q
    |||||||||||||||||||||||| ||||||||    
T  7612511 atgtttacggatgttagggttccataaagcgat 7612543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 9274945 - 9275001
Alignment:
Q  33 gagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaaca 89  Q
    ||||||||||| ||||| |||||| ||  ||| |||||||||||||| |||||||||    
T  9274945 gagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaaca 9275001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 287 - 438
Target Start/End: Complemental strand, 41966130 - 41965976
Alignment:
Q  287 ggtggttaggttagagaaatcgtt---gatttggtagaaaacagagttgtgtcgaagaattaaggaacgattgagggaattttggaggtgaagtttgatg 383  Q
    ||||||||||||||||||||| |    ||  ||||||| | ||| |||| ||||||| |||||||| ||||||||||| |||  ||||||||| ||||||    
T  41966130 ggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattgagggattttctgaggtgaaggttgatg 41966031  T
Q  384 aagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcgga 438  Q
    |||||||| |||||||||| |||| |||||||||| |||||||| ||||||||||    
T  41966030 aagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcgga 41965976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 41966423 - 41966263
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaacacatgagagaaagtggacgttgccag------aacgaggag 123  Q
    |||||||||||||||||||||| ||||  | |||| ||||||||||| || |||||||| ||  ||  ||||| || || | |||      ||||| | |    
T  41966423 caagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacggg 41966324  T
Q  124 gaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccagaa 184  Q
    ||||||||| || |||||||  ||| ||| || ||||||||| ||||||||||||||||||    
T  41966323 gaggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 41966263  T

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Target: scaffold0667 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 334 - 457
Target Start/End: Original strand, 5250 - 5373
Alignment:
Q  334 gtcgaagaattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaa 433  Q
    ||||||| || ||||| | |||||||||||||| | ||||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||| |||||    
T  5250 gtcgaaggatgaaggatctattgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaa 5349  T
Q  434 tcggatgagggattgtaccggtaa 457  Q
    |||||  || |||| |||||||||    
T  5350 tcggagaagtgattttaccggtaa 5373  T

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Target: scaffold0667; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 4913 - 4971
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 88  Q
    ||||||| |||||||| |||||||||| || |||| ||||||||||| |||||||||||    
T  4913 caagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaac 4971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 5004 - 5066
Alignment:
Q  121 gaggaggaatagaaagagggagattaggaatattctgatgtttacggatgttagggttccaga 183  Q
    |||||| |||||  |||||||||  ||| ||| | ||||||||||||||||||||||||||||    
T  5004 gaggagtaataggtagagggagaaaagggataatgtgatgtttacggatgttagggttccaga 5066  T

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Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 314 - 494
Target Start/End: Original strand, 37463293 - 37463473
Alignment:
Q  314 ttggtagaaaacagagttgtgtcgaagaattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagt 413  Q
    |||||||| | | ||||||| |||||  |||| |||  ||||||||| ||||| ||| ||||| |||||||||||||||||||||||||  |||| ||||    
T  37463293 ttggtagatatcggagttgtttcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagt 37463392  T
Q  414 gattttgaggttgaacggaatcggatgagggattgtaccggtaacagagagaggataccggtgagtatctcaggcggaaga 494  Q
    |||||||| ||||| ||||||||||  || |||| ||| |||||  | ||||||||  ||| |||||| || |||||||||    
T  37463393 gattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaaga 37463473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 37462928 - 37462986
Alignment:
Q  30 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 88  Q
    ||||||||||||||||||||||||||| || |||| | ||||||||| |||||||||||    
T  37462928 caagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaac 37462986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 335 - 438
Target Start/End: Original strand, 26575671 - 26575774
Alignment:
Q  335 tcgaagaattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaat 434  Q
    |||||| |||||||| |||||| ||||||||  ||||||||| |||||||| ||||  |||||||||| | ||| |||||||||||| ||||| ||||||    
T  26575671 tcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaagtgattttgaagttgatcggaat 26575770  T
Q  435 cgga 438  Q
    ||||    
T  26575771 cgga 26575774  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 26575304 - 26575361
Alignment:
Q  31 aagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 88  Q
    |||||||||||||||||||||||||| ||  ||| | ||||||||| |||||||||||    
T  26575304 aagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaac 26575361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 561786 - 561817
Alignment:
Q  156 tgatgtttacggatgttagggttccagaaagc 187  Q
    ||||||||||||||||||||||||||||||||    
T  561786 tgatgtttacggatgttagggttccagaaagc 561817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 368 - 448
Target Start/End: Original strand, 36225575 - 36225655
Alignment:
Q  368 gaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggatgagggattg 448  Q
    ||||||||| ||  |||||||||| ||||||||||  |||| |||||||||||| ||||| |||||||||| |||||||||    
T  36225575 gaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattg 36225655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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