View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_30 (Length: 308)
Name: NF16511_low_30
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38725361 - 38725117
Alignment:
| Q |
1 |
accaggaatgacattatcttcattgttctcgataaatatatcaagtgaaggtactgtaaacacaatttccatccatcaaaaccttttcacataaacaata |
100 |
Q |
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| T |
38725361 |
accaggaatgacattatcttcattgttctcggtaaatatatcaagtgaaggtactgtaaacacaatttccatccatcaaaaccttttcacataaacaata |
38725262 |
T |
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| Q |
101 |
gaaaaatgcttattatgaacagctactataaatacataagaattttattgtcttaaatttaaattaagcaaagacacaattaagagtggttgccaaatag |
200 |
Q |
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| T |
38725261 |
gaaaaatgcttattatgaacagctactataaatacataagaattttattgtcttaaatttaaattaagcaaagacacaattaagagtggttaccaaatag |
38725162 |
T |
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| Q |
201 |
catatgctc-aaacatggaagcactcagcagaaatacataataaa |
244 |
Q |
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| T |
38725161 |
catatgctcaaaacatggaagcactcagcagaaatacataataaa |
38725117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 38725122 - 38725079
Alignment:
| Q |
265 |
aataaaggcacacctggaagaaaagaaccgaataatgcaagtac |
308 |
Q |
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| T |
38725122 |
aataaaggcatacctggaagaaaagaaccgaataatgcaagtac |
38725079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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