View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_39 (Length: 242)
Name: NF16511_low_39
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 45233397 - 45233518
Alignment:
| Q |
1 |
caacaccctgaaggctatagtgacctaataaacttaatttactttctggcttgaatactacgctttataaactctaggaagataaacacacataatgaga |
100 |
Q |
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| T |
45233397 |
caacaccctataggctatagtgacctaatcaacttaatttactttctggcttgaataatacgctttaaaaactctaggaagataaacacacataatgaga |
45233496 |
T |
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| Q |
101 |
cagaacaagtgactaacaactc |
122 |
Q |
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| T |
45233497 |
cagaacaagtgactaacaactc |
45233518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 45233549 - 45233604
Alignment:
| Q |
153 |
tctgataattatatgacaaatgtaatcaatcttctcttcttacagcaagatgttga |
208 |
Q |
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| T |
45233549 |
tctgataattatatgacaaatgtaatcaatctcctcttcttacagcaagatgttga |
45233604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 45249546 - 45249601
Alignment:
| Q |
33 |
cttaatttactttctggcttgaatactacgctttataaactctaggaagataaaca |
88 |
Q |
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| T |
45249546 |
cttaatttactttctggcttgaataatacgctttaaaaactctaggaagataaaca |
45249601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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