View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_4 (Length: 588)
Name: NF16511_low_4
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 12 - 572
Target Start/End: Original strand, 7562619 - 7563182
Alignment:
| Q |
12 |
gtgagaagaaaataaaggaataggaacaatgtcttcccctcctgattctgataactcttcttcgacgccttcagattctccaccagaagagtcaccacaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7562619 |
gtgagaagaaaataaaggaataggaacaatgtcttcccctcctgattctgataactcttcttcgacgccttcagattctccaccagaagagtcaccacaa |
7562718 |
T |
|
| Q |
112 |
tcaccaccaccatcaccaccttcagattcccagccgtctccttcaggatcaccgccaccgccaccaccttcaggatcacaaccttctcctccaccaccta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7562719 |
tcaccaccaccatcaccaccttcagattcccagccgtctccttcaggatcaccgccaccgccaccaccttcaggatcacaaccttctcctccaccaccta |
7562818 |
T |
|
| Q |
212 |
catcaaacaaaccatcaccaccatcccccaatggatccggaaattcaccaactccggtagcgggacgtcctccaccagcctccaatagatccggaaattc |
311 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7562819 |
catcaaacaaaccatccccaccatcccccaatggatccggaaattcaccaactccggtagcgggacgtcctccaccagcctccaatagatctggaaattc |
7562918 |
T |
|
| Q |
312 |
acaatcacctccacacaaatcaccaactacgccaactggacactcaaatggtaatc---acaacaataacaataacaataacaatgatgatgccactaag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7562919 |
acaatcacctccacacaaatcaccaactacgccaactggacactcaaatggtaatcacaacaacaataacaataacaataacaatgatgatgccactaag |
7563018 |
T |
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| Q |
409 |
gcaatagttggagtagtgattggggtggcagttgctcttatcattttggtcatcgcttgctttgtctgctgcaggaagaagaaaagaaagtactattatg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7563019 |
gcaatagttggagtagtgattggggtggcagttgctcttatcattttggtcatcgcttgctttgtctgctgcaggaagaagaaaagaaagtactattatg |
7563118 |
T |
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| Q |
509 |
gagaacgcccacctcctggaaaaggtgccaaaatcacaaccttcgtaatttttctttatatata |
572 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
7563119 |
gagaacgcccacctcctggaaaaggtgccaaaatcataattttcgtaatttttctttatatata |
7563182 |
T |
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