View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16511_low_46 (Length: 223)
Name: NF16511_low_46
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16511_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 1571903 - 1572067
Alignment:
| Q |
45 |
ttctaatatatgtaatatttaatatattggtaatattgttgtagagaaaataatttagagtcaaggcaagtgatttctatttatatgccagaaaataatt |
144 |
Q |
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| T |
1571903 |
ttctaatatatgtaatatttaatatattggtaatattgttgtagagaaaataatttagagtaaaggcaagtgatttctatttatatgtcagaaaataatt |
1572002 |
T |
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| Q |
145 |
aannnnnnnaagaggctaaaatagaatttattaactgaaacagttggtatttccagcataaaatg |
209 |
Q |
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| T |
1572003 |
aatttttttaagaggctaaaatagagtatattaactgaaacggttggtatttccagcacaaaatg |
1572067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 1571797 - 1571902
Alignment:
| Q |
21 |
cattgttagtgtgtatttattaaattctaatatatgtaatatttaatatattggtaatattgttgtagagaaaataatttagagtcaaggcaagtgattt |
120 |
Q |
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| T |
1571797 |
cattgttagtgtgtatttattaaattctaatatatgtaatatttaatatattggtaatattgctgtagagaaaataatttagagtcaaggcaagtaattt |
1571896 |
T |
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| Q |
121 |
ctattt |
126 |
Q |
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| T |
1571897 |
ctattt |
1571902 |
T |
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