View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16511_low_5 (Length: 582)

Name: NF16511_low_5
Description: NF16511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16511_low_5
NF16511_low_5
[»] chr2 (25 HSPs)
chr2 (1-570)||(39459245-39459828)
chr2 (398-563)||(39473287-39473452)
chr2 (388-539)||(39137894-39138045)
chr2 (382-566)||(39152572-39152756)
chr2 (384-566)||(39381375-39381557)
chr2 (384-570)||(39421696-39421882)
chr2 (402-569)||(39414664-39414831)
chr2 (473-571)||(39161834-39161932)
chr2 (473-571)||(39207262-39207360)
chr2 (203-287)||(39157516-39157600)
chr2 (402-559)||(39397731-39397888)
chr2 (473-566)||(39389090-39389183)
chr2 (224-308)||(39411378-39411459)
chr2 (453-562)||(39468340-39468449)
chr2 (1-58)||(35198246-35198303)
chr2 (200-273)||(45223832-45223905)
chr2 (386-557)||(39370114-39370285)
chr2 (454-541)||(44624027-44624114)
chr2 (520-566)||(39192440-39192486)
chr2 (520-566)||(39198120-39198166)
chr2 (520-562)||(39215633-39215675)
chr2 (384-436)||(39161948-39162000)
chr2 (384-436)||(39207194-39207246)
chr2 (384-428)||(39215743-39215787)
chr2 (384-440)||(39389022-39389078)
[»] chr7 (5 HSPs)
chr7 (389-539)||(19807844-19807994)
chr7 (1-58)||(18750863-18750920)
chr7 (1-74)||(23948363-23948436)
chr7 (2-58)||(30737168-30737224)
chr7 (1-37)||(32855362-32855398)
[»] chr6 (4 HSPs)
chr6 (383-571)||(16113291-16113479)
chr6 (5-62)||(17422274-17422331)
chr6 (4-51)||(2468490-2468538)
chr6 (1-37)||(34625742-34625778)
[»] chr8 (4 HSPs)
chr8 (457-559)||(45342054-45342156)
chr8 (1-45)||(25799148-25799192)
chr8 (1-39)||(29096952-29096990)
chr8 (8-58)||(34259817-34259867)
[»] chr1 (1 HSPs)
chr1 (1-52)||(26462660-26462711)
[»] chr5 (3 HSPs)
chr5 (250-304)||(38461517-38461571)
chr5 (9-58)||(38461753-38461803)
chr5 (1-54)||(28322232-28322285)
[»] chr3 (2 HSPs)
chr3 (1-77)||(49636841-49636917)
chr3 (4-52)||(55053774-55053822)
[»] chr4 (2 HSPs)
chr4 (4-51)||(27131690-27131738)
chr4 (1-37)||(32369927-32369963)


Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 39459828 - 39459245
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgtgtctatgttggtgcttcatagataag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39459828 tgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgtgtctgtgttggtgcttcatagataag 39459729  T
Q  101 aacacaaaatatgaaaaagtatggcaaacaacagaatccaaatagggaaataacaaacttgtgtgtttttctagttgcagaccgagaccatgtatcattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459728 aacacaaaatatgaaaaagtatggcaaacaacagaatccaaatagggaaataacaaacttgtgtgtttttctagttgcagaccgagaccatgtatcattg 39459629  T
Q  201 tcatcagatataaaacaagcaaaaatgtgagaaatagaacatcaacttcatcattaagtttcacattcatcttttgaatactaactccaagttcacacag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459628 tcatcagatataaaacaagcaaaaatgtgagaaatagaacatcaacttcatcattaagtttcacattcatcttttgaatactaactccaagttcacacag 39459529  T
Q  301 atattttggactttattcctacctttaagctccctcatatgtgtagatcaggttgtaaaaaataacacatcattaaatga--------------aatttt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||              ||||||    
T  39459528 atattttggactttattcctacctttaagctccctcatatgtgtagatcaggttataaaaaataacacatcattaaatgaaattgttgaaatgaaatttt 39459429  T
Q  387 caataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttc 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459428 caataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttc 39459329  T
Q  487 acttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttc 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459328 acttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttc 39459245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 398 - 563
Target Start/End: Original strand, 39473287 - 39473452
Alignment:
Q  398 atgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcacttgtccatc 497  Q
    ||||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||||| ||||| ||||||||||||||||||||  |  ||||||    
T  39473287 atgaataagaacatttacccgattctatttcctcatcaaaatattttattaatggttcatatcgtttctctgtcaactcaggctccttcggtgttccatc 39473386  T
Q  498 aaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgag 563  Q
    |   ||||| ||||||||||| ||||||| ||||| ||||||||  ||||| ||||||||||||||    
T  39473387 atgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgag 39473452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 388 - 539
Target Start/End: Complemental strand, 39138045 - 39137894
Alignment:
Q  388 aataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttca 487  Q
    ||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||| || |||| |||| |||||||| ||||||  |||||||||||||    
T  39138045 aataaactagatgaataagaactcttacccgattctttttcctcatcaaaatagtttatcaatgattcaaattgtttctctgtcagttcaggctccttca 39137946  T
Q  488 cttgtccatcaaaattattaagctttgactctggatccttgacttgtccttc 539  Q
     |||||||||||| ||||  ||||||||  | ||||||||||  ||||||||    
T  39137945 attgtccatcaaatttatccagctttgaaccaggatccttgatctgtccttc 39137894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 382 - 566
Target Start/End: Complemental strand, 39152756 - 39152572
Alignment:
Q  382 attttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggct 481  Q
    ||||||||||| ||| |  ||||| |||| ||||| |||||| |||||||||||||||| || ||||||||| ||||||||||| ||||||| ||| |||    
T  39152756 attttcaataaactagacaaataaaaacatttacctgattctatttcctcatcaaaatattttattaatggtccatattgtttctctgtcaaatcatgct 39152657  T
Q  482 ccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctc 566  Q
    |||||   |||||||||   ||||| |||||||||||  |||||||| ||| | ||||||  ||||| |||||||||||||||||    
T  39152656 ccttcgactgtccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaacttgagctc 39152572  T

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Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 384 - 566
Target Start/End: Original strand, 39381375 - 39381557
Alignment:
Q  384 tttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctcc 483  Q
    ||||| ||| ||| ||||||||||||| ||||| ||||||   ||||| |||| ||| ||  |||||| ||||||||||||  ||||||| | ||||||     
T  39381375 tttcagtaaactatatgaataagaacatttaccagattcttgctcctcgtcaatatattttcttaatgcttcatattgtttacctgtcaatttaggctct 39381474  T
Q  484 ttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctc 566  Q
    |||| ||||||||| || ||||| |||||||| || ||||||||| |||||| |||||| ||||| |||||||||||||||||    
T  39381475 ttcatttgtccatccaatttatttagctttgaatcaggatccttgtcttgtctttcaaactgcttctcttttaacttgagctc 39381557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 384 - 570
Target Start/End: Original strand, 39421696 - 39421882
Alignment:
Q  384 tttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagt--tc-attaatggttcatattgtttcactgtcaactcaggc 480  Q
    |||||||||  || ||||||||||||| ||||| |||||  |||||||||||||||| |  || ||||| |   |||| |||||| ||||||||||||||    
T  39421696 tttcaataaattagatgaataagaacatttaccagattcattttcctcatcaaaatattcttctattaaag---catactgtttctctgtcaactcaggc 39421792  T
Q  481 tccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttc 570  Q
    ||||||| |||| |||| || ||||| ||||| ||||| |||||||||||| || || ||||| ||||||||||||| ||||||||||||    
T  39421793 tccttcagttgttcatctaacttatttagcttcgactcgggatccttgactagtgctccaaatcgcttgtcttttaatttgagctctttc 39421882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 402 - 569
Target Start/End: Original strand, 39414664 - 39414831
Alignment:
Q  402 ataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaa 501  Q
    ||||||||| ||||||||||   || ||||||||||||  || ||||| ||||||||||||||  || ||||||||| |||||||   |||||||||||     
T  39414664 ataagaacatttacccgatttgcttccctcatcaaaatcttttattaacggttcatattgtttttctctcaactcagactccttccggtgtccatcaaat 39414763  T
Q  502 ttattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctcttt 569  Q
    || |  ||||||||||| |||||||| |||||||||||||| || || || |||||||||||||||||    
T  39414764 ttttccagctttgactcaggatccttaacttgtccttcaaactgtttctcatttaacttgagctcttt 39414831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 473 - 571
Target Start/End: Complemental strand, 39161932 - 39161834
Alignment:
Q  473 actcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttct 571  Q
    ||||||||||||| | |||||||||||| ||||| | ||||||||  ||||||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  39161932 actcaggctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttct 39161834  T

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Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 473 - 571
Target Start/End: Original strand, 39207262 - 39207360
Alignment:
Q  473 actcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttct 571  Q
    ||||||||||||| | |||||||||||| ||||| | ||||||||  ||||||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  39207262 actcaggctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttct 39207360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 39157600 - 39157516
Alignment:
Q  203 atcagatataaaacaagcaaaaatgtgagaaatagaacatcaacttcatcattaagtttcacattcatcttttgaatactaactc 287  Q
    |||||||||  |||||||| ||||||| |||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  39157600 atcagatatttaacaagcataaatgtgcgaaatagaacattaacttcatcgttaagtttcatattcatcttttgaatactaactc 39157516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 402 - 559
Target Start/End: Original strand, 39397731 - 39397888
Alignment:
Q  402 ataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaa 501  Q
    ||||||||  |||||||||||| |||||||||  | ||| ||  |||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  39397731 ataagaacctttacccgattctttttcctcattgatatatttttttaacgcttcatattgtttccctgtcaactcaggctccttcagttgtccatcaaat 39397830  T
Q  502 ttattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaact 559  Q
    ||||  ||| |||||||  | ||||||||| | ||| |||  ||||| ||||||||||    
T  39397831 ttatccagccttgactcaagttccttgactcgacctgcaacctgcttctcttttaact 39397888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 473 - 566
Target Start/End: Original strand, 39389090 - 39389183
Alignment:
Q  473 actcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctc 566  Q
    |||| |||||||| | |||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||||||||    
T  39389090 actcgggctcctttatttgtccatcaaatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctc 39389183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 39411459 - 39411378
Alignment:
Q  224 aatgtgagaaatagaacatcaacttcatcattaagtttcacattcatcttttgaatactaactccaagttcacacagatattttg 308  Q
    ||||||||||||||||||||||||||||   ||||||| | |||||| |||| ||||| ||||||||||||||||| ||||||||    
T  39411459 aatgtgagaaatagaacatcaacttcat---taagttttatattcatattttaaataccaactccaagttcacacaaatattttg 39411378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 453 - 562
Target Start/End: Complemental strand, 39468449 - 39468340
Alignment:
Q  453 ttcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtct 552  Q
    ||||||||||||| || ||||||||||||||||| ||||||| ||||| ||| |   ||||||||   | |||||||||||||||||||  ||||| |||    
T  39468449 ttcatattgtttccctttcaactcaggctccttcgcttgtccgtcaaacttaatcgactttgactgaagttccttgacttgtccttcaatctgcttctct 39468350  T
Q  553 tttaacttga 562  Q
    ||||||||||    
T  39468349 tttaacttga 39468340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35198246 - 35198303
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 58  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||    
T  35198246 tgattacattcaattaattcattttcttaaattatgaccaatatcgatgtgttagtgt 35198303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 45223832 - 45223905
Alignment:
Q  200 gtcatcagatataaaacaagcaaaaatgtgagaaatagaacatcaacttcatcattaagtttcacattcatctt 273  Q
    ||||||||||||| |||||| | |||||||||||||||||||||||||| |||||||  ||||| ||| |||||    
T  45223832 gtcatcagatatataacaagaataaatgtgagaaatagaacatcaacttgatcattagatttcatatttatctt 45223905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 557
Target Start/End: Complemental strand, 39370285 - 39370114
Alignment:
Q  386 tcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctcctt 485  Q
    ||||||| ||| ||||||||||||| |||||| | ||| |||||||  ||| ||  |   ||||||  ||||||||||||  |||| ||||||||| |||    
T  39370285 tcaataaactagatgaataagaacatttacccaaatctttttcctcggcaatatgctctgttaatgcgtcatattgtttctttgtcgactcaggcttctt 39370186  T
Q  486 cacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaa 557  Q
     | ||||||||| || ||||| | |||||||||  || |||||||||||| | |||| ||||| ||||||||    
T  39370185 tagttgtccatccaatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctcttttaa 39370114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 541
Target Start/End: Complemental strand, 44624114 - 44624027
Alignment:
Q  454 tcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaa 541  Q
    |||| ||||||| ||||||||||| |||||||   ||||||| |||||||||| ||||||||||   ||||||||| |||| ||||||    
T  44624114 tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaa 44624027  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 566
Target Start/End: Original strand, 39192440 - 39192486
Alignment:
Q  520 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctc 566  Q
    |||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  39192440 ggatccttgactagtccttcaaactgcttttcttttaagttgagctc 39192486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 566
Target Start/End: Original strand, 39198120 - 39198166
Alignment:
Q  520 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctc 566  Q
    |||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  39198120 ggatccttgactagtccttcaaactgcttttcttttaagttgagctc 39198166  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 562
Target Start/End: Complemental strand, 39215675 - 39215633
Alignment:
Q  520 ggatccttgacttgtccttcaaattgcttgtcttttaacttga 562  Q
    |||||||||||||||||| |||| ||||| |||||||||||||    
T  39215675 ggatccttgacttgtcctccaaactgcttctcttttaacttga 39215633  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 436
Target Start/End: Complemental strand, 39162000 - 39161948
Alignment:
Q  384 tttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaa 436  Q
    ||||||||| ||| ||||| ||||||| ||||| |||||| ||||||||||||    
T  39162000 tttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaa 39161948  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 39207194 - 39207246
Alignment:
Q  384 tttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaa 436  Q
    ||||||||| ||| ||||| ||||||| ||||| |||||| ||||||||||||    
T  39207194 tttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaa 39207246  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 39215787 - 39215743
Alignment:
Q  384 tttcaataagctaaatgaataagaacacttacccgattctgtttc 428  Q
    ||||||||| ||| ||||||||||||| |||||||||| ||||||    
T  39215787 tttcaataaactagatgaataagaacatttacccgattgtgtttc 39215743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 39389022 - 39389078
Alignment:
Q  384 tttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaata 440  Q
    ||||||||| ||  ||||||||||||| ||||| |||||| ||||| ||||||||||    
T  39389022 tttcaataaactggatgaataagaacatttaccggattctttttccccatcaaaata 39389078  T

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Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 389 - 539
Target Start/End: Complemental strand, 19807994 - 19807844
Alignment:
Q  389 ataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcac 488  Q
    |||| ||| ||||||||||||  ||||||||| || ||||||||||||||||||| ||||||| |||| |||||||| |||||||||||| ||||||||     
T  19807994 ataaactagatgaataagaacttttacccgatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaa 19807895  T
Q  489 ttgtccatcaaaattattaagctttgactctggatccttgacttgtccttc 539  Q
    |||||||||||| ||||  ||||||||  | |||||||||| || ||||||    
T  19807894 ttgtccatcaaatttatccagctttgaaccaggatccttgatttttccttc 19807844  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18750920 - 18750863
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 58  Q
    ||||||||||||||||  |||||| ||||||||||||||  |||||| |||| |||||    
T  18750920 tgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtcagtgt 18750863  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23948436 - 23948363
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgt 74  Q
    ||||||||||||||||||| ||||  | ||||||||| || ||||||| ||||||| | || |||| |||||||    
T  23948436 tgattacattcaattaattgattttttcaaattattatcagtgtcgacatgttagtcttgtgtccggtgtttgt 23948363  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 30737168 - 30737224
Alignment:
Q  2 gattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 58  Q
    ||||||||||| |||  |||||| ||||||||||||| | |||||| ||||||||||    
T  30737168 gattacattcagttatgtcattttcttaaattattacaactgtcgatgtgttagtgt 30737224  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32855398 - 32855362
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattatta 37  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  32855398 tgattacattcaattaaatcattttcttaaattatta 32855362  T

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Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 383 - 571
Target Start/End: Complemental strand, 16113479 - 16113291
Alignment:
Q  383 ttttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctc 482  Q
    |||||||||| ||| |||||| ||||||||||||||||||| ||||||| |||| ||  ||  | |||| |||| | |||||| |||| |||||||||||    
T  16113479 ttttcaataaactagatgaatgagaacacttacccgattctttttcctcgtcaatatgttttttaaatgcttcagagtgtttccctgttaactcaggctc 16113380  T
Q  483 cttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttct 571  Q
    ||||| ||||||  |||| |  || |||||||||||  | |||||||||||| ||||||  ||||| ||||||||||||||||| ||||    
T  16113379 cttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaacttgagctccttct 16113291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 17422274 - 17422331
Alignment:
Q  5 tacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtc 62  Q
    ||||||||||||  |||||| || ||||||||| |  |||||||||||||||||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgtgttagtgtggtc 17422331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 2468490 - 2468538
Alignment:
Q  4 ttacattcaattaattc-atttccttaaattattaccaatgtcgacgtg 51  Q
    ||||||||||||| ||| |||| |||||||||||||||||||| |||||    
T  2468490 ttacattcaattacttccattttcttaaattattaccaatgtctacgtg 2468538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34625778 - 34625742
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattatta 37  Q
    |||||||||||||||||||||||| || |||||||||    
T  34625778 tgattacattcaattaattcattttctcaaattatta 34625742  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 559
Target Start/End: Complemental strand, 45342156 - 45342054
Alignment:
Q  457 tattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtctttta 556  Q
    |||||||||  |||||||||| ||||||| | ||||||||| |||||||| |||||||||||  | ||||||| |||  ||||||| || || |||||||    
T  45342156 tattgtttctttgtcaactcaagctcctttatttgtccatccaaattattcagctttgactcaaggtccttgatttgcacttcaaactgattctctttta 45342057  T
Q  557 act 559  Q
    |||    
T  45342056 act 45342054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25799192 - 25799148
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattattaccaatgtc 45  Q
    |||| ||||||||||||||||||| || |||||||||||||||||    
T  25799192 tgatcacattcaattaattcattttctcaaattattaccaatgtc 25799148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29096990 - 29096952
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattattacc 39  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  29096990 tgattacattcaattaatttattttcttaaattattacc 29096952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 34259817 - 34259867
Alignment:
Q  8 attcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 58  Q
    ||||||||| ||||||| || ||||||||||| ||||| ||||||||||||    
T  34259817 attcaattatttcattttctcaaattattaccgatgtctacgtgttagtgt 34259867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26462660 - 26462711
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgt 52  Q
    |||||||||||||||| ||||||| |||||||||||| || |||||||||||    
T  26462660 tgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgt 26462711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 38461571 - 38461517
Alignment:
Q  250 atcattaagtttcacattcatcttttgaatactaactccaagttcacacagatat 304  Q
    |||||||||||||| ||||||||||||||||| || |||||||||| ||| ||||    
T  38461571 atcattaagtttcatattcatcttttgaataccaattccaagttcatacaaatat 38461517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 38461803 - 38461753
Alignment:
Q  9 ttcaattaattcatttccttaaattatta-ccaatgtcgacgtgttagtgt 58  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||||||||||    
T  38461803 ttcaattaatttatttccttaaattattacccaatgtcgtcgtgttagtgt 38461753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28322285 - 28322232
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgtta 54  Q
    |||||||||||||||||||||||| || ||||||| || | |||||||||||||    
T  28322285 tgattacattcaattaattcattttctcaaattatcactagtgtcgacgtgtta 28322232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 49636841 - 49636917
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgtgtc 77  Q
    |||||||||||||||||||||||| || ||||||||||||  |||||  ||| ||||| || || ||||| ||||||    
T  49636841 tgattacattcaattaattcattttctcaaattattaccagagtcgatctgtcagtgttgtgtctgatgtatgtgtc 49636917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 55053822 - 55053774
Alignment:
Q  4 ttacattcaattaattcatttccttaaattattaccaatgtcgacgtgt 52  Q
    |||||||||  |||||||||| ||||||||||||||| | |||||||||    
T  55053822 ttacattcatataattcattttcttaaattattaccactctcgacgtgt 55053774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 27131690 - 27131738
Alignment:
Q  4 ttacattcaattaattc-atttccttaaattattaccaatgtcgacgtg 51  Q
    ||||||||||||| ||| |||| |||||||||||||||||||| |||||    
T  27131690 ttacattcaattacttccattttcttaaattattaccaatgtctacgtg 27131738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32369927 - 32369963
Alignment:
Q  1 tgattacattcaattaattcatttccttaaattatta 37  Q
    |||||||||||||||||||||||| || |||||||||    
T  32369927 tgattacattcaattaattcattttctcaaattatta 32369963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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